RchiOBHm_Chr1g0331251

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029626
Physical Location & Seq
Forward (+)
21089670 .. 21090176
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56028

Sequence Viewer

Length: 450 bp
ATGCTCCAAGGCCTGACCAGCAAAACTCGATTCGGGGGGAAGATTATTGATCAGTGCCTAGCTTCAAGTGTTTGCAAGTTGATAGATTGCAGTTCTGGTGGGATTAAGTGTGACAACCCGGCTAGTGTTATGAGGGTGTTTCAGAGCTCAATTCTGGCGGGTTGTATTCCTGTTTTCTTTCATCCGGGTACTGCTTATTTGCAATATTTATGGCACTTACCTAAGAATCATACCAAGTATTCGGTGTTTATTCCGGTGAGGTATGTAGAAGATTTGAAAGAAGGCCTCATTGAGAGAACCTTGGTTGGAATTTCAAAGGAGGAAGAATTGGAAATGAGAGAAGAGGTTATAAGGCTAATACCAAAGCTGGTGTATGCAGATCCCATGTCAAGATTAGAGACCGAAGATGCATTTGATTTATCTGTCAAGGGAATTCTCGAGACGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

149

Amino Acids

16.74

Weight (kDa)

5.92

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 46 - 94 1.7e-08 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029626)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331251
rosa_samantha Rh1AG116700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 2 cut(s) 309, 432
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 3 cut(s) 66, 277, 315
AluBI AGCT 3 cut(s) 62, 147, 367
AluI AGCT 3 cut(s) 62, 147, 367
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 392, 434
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 10, 283
ApoI RAATTY 2 cut(s) 309, 432
AsuC2I CCSGG 2 cut(s) 119, 186
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 437
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 2 cut(s) 119, 186
BcoDI GTCTC 2 cut(s) 392, 434
BfaI CTAG 2 cut(s) 59, 123
Bme1390I CCNGG 2 cut(s) 119, 186
BmeT110I CYCGRG 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 119, 186
BmsI GCATC 1 cut(s) 397
BpuMI CCSGG 2 cut(s) 119, 186
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 7, 300
BsaWI WCCGGW 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 7, 300
BseGI GGATG 1 cut(s) 181
BshFI GGCC 2 cut(s) 12, 285
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 3 cut(s) 119, 185, 254
BsmAI GTCTC 2 cut(s) 392, 434
BsmBI CGTCTC 1 cut(s) 434
BsnI GGCC 2 cut(s) 12, 285
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 49, 379
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 12, 285
BspPI GGATC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 7, 300
BssMI GATC 2 cut(s) 49, 379
BssT1I CCWWGG 2 cut(s) 7, 300
Bst6I CTCTTC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 2 cut(s) 52, 382
BstMAI GTCTC 2 cut(s) 392, 434
BstMBI GATC 2 cut(s) 49, 379
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 117, 184
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 2 cut(s) 12, 285
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 59
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 385
CviJI RGCY 7 cut(s) 12, 62, 122, 147, 285, 355, 367
CviKI_1 RGCY 7 cut(s) 12, 62, 122, 147, 285, 355, 367
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 51, 381
DpnII GATC 2 cut(s) 49, 379
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 7, 300
Eco147I AGGCCT 2 cut(s) 12, 285
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 7, 300
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 7, 300
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 1 cut(s) 388
FaiI YATR 8 cut(s) 131, 211, 231, 264, 350, 375, 386, 448
FatI CATG 1 cut(s) 384
FauI CCCGC 1 cut(s) 151
FbaI TGATCA 1 cut(s) 49
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 149
FspBI CTAG 2 cut(s) 59, 123
HaeIII GGCC 2 cut(s) 12, 285
HapII CCGG 3 cut(s) 119, 185, 254
Hin1II CATG 1 cut(s) 388
HinfI GANTC 2 cut(s) 30, 226
HpaII CCGG 3 cut(s) 119, 185, 254
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 390, 437, 439
HpyAV CCTTC 1 cut(s) 275
HpyCH4V TGCA 5 cut(s) 75, 90, 202, 377, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 2 cut(s) 49, 379
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 9 cut(s) 26, 31, 81, 132, 140, 183, 198, 267, 353
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 59, 123
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 51, 381
MboI GATC 2 cut(s) 49, 379
MboII GAAGA 5 cut(s) 52, 281, 335, 353, 416
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 4 cut(s) 150, 309, 326, 432
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 5 cut(s) 126, 252, 296, 313, 337
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 105
MspI CCGG 3 cut(s) 119, 185, 254
MspR9I CCNGG 2 cut(s) 119, 186
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 2 cut(s) 119, 186
NdeII GATC 2 cut(s) 49, 379
NlaIII CATG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 412
PaeR7I CTCGAG 1 cut(s) 437
PceI AGGCCT 2 cut(s) 12, 285
PfeI GAWTC 2 cut(s) 30, 226
PsiI TTATAA 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 2 cut(s) 49, 379
ScrFI CCNGG 2 cut(s) 119, 186
SduI GDGCHC 1 cut(s) 149
SetI ASST 7 cut(s) 64, 149, 223, 263, 302, 348, 369
SfaNI GCATC 1 cut(s) 397
Sfr274I CTCGAG 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 4 cut(s) 150, 309, 326, 432
SseBI AGGCCT 2 cut(s) 12, 285
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 206
SspMI CTAG 2 cut(s) 59, 123
SstI GAGCTC 1 cut(s) 149
StuI AGGCCT 2 cut(s) 12, 285
StyD4I CCNGG 2 cut(s) 117, 184
StyI CCWWGG 2 cut(s) 7, 300
TaqI TCGA 2 cut(s) 28, 438
TaqII GACCGA 1 cut(s) 416
TasI AATT 4 cut(s) 150, 309, 326, 432
TfiI GAWTC 2 cut(s) 30, 226
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 59
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 59
XapI RAATTY 2 cut(s) 309, 432
XhoI CTCGAG 1 cut(s) 437
XspI CTAG 2 cut(s) 59, 123
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.