Rh1AG116700

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0029626
Physical Location & Seq
Forward (+)
20057786 .. 20058388
603 bp
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UTR
Exon/CDS
Intron
Rh1AG116700.1

Sequence Viewer

Length: 603 bp
ATGCTCCAAGGCCTGACCAGCAAAACTCGATTCAGGGGGAAGATTATTGATCAGTGCCTAGCTTCAAGTGTTTGCAAGTTGATAGATTGCAGTTCTGGTGGGATTAAGTGTGACAACCCGGCTAGTGTTATGAGGGTGTTTCAGAGCTCAGTTTATTGCTTGCAGCCTACAGGGGATTCATACACTAGGAAATCAGCTTTTGACTCGATTCTGGCGGGTTGTATTCCGGTTTTCTTTCATCCGGGTACTGCTTATTCGCAATATTTATGGCACTTACCTAAGAATCATACCAAGTATTTGGTGTTTATTTCGGTGAGGTATGTAGAAGATTTGAAAGAAGGCCTCATTGAGAGAACCTTGGTTGGAATTTCAAAGGAGAAAGAATTGGAAATGAGAGAAGAGGTTATAAGACTAATACCAAAGCTGGTGTATGTAGATCCCATGTCAAGATTAGAGACCGAAGATGCATTTGATTTATCTGTCAAGGGAATTCTCGAGACGATAGAGAATGTTAGGAAGGTGATTAGAGAAGGAACAGATCCTAGCATTGGTTTTGCAGATGAGGATAGTTACAAGTACACATTTCCAAAGACATTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

200

Amino Acids

22.66

Weight (kDa)

6.34

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 7 - 113 2.4e-23 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029626)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331251
rosa_samantha Rh1AG116700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 431, 533
AcsI RAATTY 2 cut(s) 366, 489
AfaI GTAC 2 cut(s) 247, 578
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 3 cut(s) 66, 334, 372
AluBI AGCT 4 cut(s) 62, 147, 197, 424
AluI AGCT 4 cut(s) 62, 147, 197, 424
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 449, 491
AlwI GGATC 2 cut(s) 431, 533
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 2 cut(s) 10, 340
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 366, 489
AsuC2I CCSGG 2 cut(s) 119, 243
AsuHPI GGTGA 2 cut(s) 325, 532
AvaI CYCGRG 1 cut(s) 494
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 175
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 2 cut(s) 119, 243
BcoDI GTCTC 2 cut(s) 449, 491
BfaI CTAG 4 cut(s) 59, 123, 186, 543
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 119, 243
BmeT110I CYCGRG 1 cut(s) 494
BmrFI CCNGG 2 cut(s) 119, 243
BmsI GCATC 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 119, 243
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 7, 357
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 7, 357
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 2 cut(s) 12, 342
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 3 cut(s) 119, 227, 242
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 2 cut(s) 449, 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 12, 342
Bso31I GGTCTC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 49, 436, 538
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 12, 342
BspCNI CTCAG 1 cut(s) 161
BspPI GGATC 2 cut(s) 431, 533
BspTNI GGTCTC 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 7, 357
BssMI GATC 3 cut(s) 49, 436, 538
BssT1I CCWWGG 2 cut(s) 7, 357
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 148, 279
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 3 cut(s) 52, 439, 541
BstMAI GTCTC 2 cut(s) 449, 491
BstMBI GATC 3 cut(s) 49, 436, 538
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 117, 241
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 2 cut(s) 436, 538
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 436, 538
BsuRI GGCC 2 cut(s) 12, 342
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 246, 577
CviAII CATG 1 cut(s) 442
CviJI RGCY 8 cut(s) 12, 62, 122, 147, 166, 197, 342, 424
CviKI_1 RGCY 8 cut(s) 12, 62, 122, 147, 166, 197, 342, 424
CviQI GTAC 2 cut(s) 246, 577
DdeI CTNAG 2 cut(s) 148, 279
DpnI GATC 3 cut(s) 51, 438, 540
DpnII GATC 3 cut(s) 49, 436, 538
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 7, 357
Eco147I AGGCCT 2 cut(s) 12, 342
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 489
EcoT14I CCWWGG 2 cut(s) 7, 357
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 7, 357
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 1 cut(s) 445
FaiI YATR 8 cut(s) 131, 181, 268, 288, 321, 407, 432, 443
FatI CATG 1 cut(s) 441
FauI CCCGC 1 cut(s) 208
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 4 cut(s) 59, 123, 186, 543
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 12, 342
HapII CCGG 3 cut(s) 119, 227, 242
Hin1II CATG 1 cut(s) 445
HinfI GANTC 5 cut(s) 30, 176, 203, 208, 283
HpaII CCGG 3 cut(s) 119, 227, 242
HphI GGTGA 2 cut(s) 325, 532
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 447, 494, 496
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 332, 511, 524
HpyCH4V TGCA 5 cut(s) 75, 90, 163, 467, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 148, 279
Hsp92II CATG 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 49, 436, 538
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 454
MaeI CTAG 4 cut(s) 59, 123, 186, 543
MaeIII GTNAC 2 cut(s) 110, 569
MalI GATC 3 cut(s) 51, 438, 540
MboI GATC 3 cut(s) 49, 436, 538
MboII GAAGA 4 cut(s) 52, 338, 410, 473
MflI RGATCY 2 cut(s) 436, 538
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 3 cut(s) 366, 383, 489
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 5 cut(s) 126, 309, 353, 394, 556
Mph1103I ATGCAT 1 cut(s) 469
MseI TTAA 1 cut(s) 105
MspI CCGG 3 cut(s) 119, 227, 242
MspR9I CCNGG 2 cut(s) 119, 243
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 2 cut(s) 119, 243
NdeII GATC 3 cut(s) 49, 436, 538
NlaIII CATG 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 494
PceI AGGCCT 2 cut(s) 12, 342
PfeI GAWTC 4 cut(s) 30, 176, 208, 283
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PsiI TTATAA 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 149
PsuI RGATCY 2 cut(s) 436, 538
RsaI GTAC 2 cut(s) 247, 578
RsaNI GTAC 2 cut(s) 246, 577
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 49, 436, 538
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 119, 243
SduI GDGCHC 1 cut(s) 149
SetI ASST 9 cut(s) 64, 149, 199, 280, 320, 359, 405, 426, 522
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 494
SlaI CTCGAG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 3 cut(s) 366, 383, 489
SseBI AGGCCT 2 cut(s) 12, 342
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 263
SspMI CTAG 4 cut(s) 59, 123, 186, 543
SstI GAGCTC 1 cut(s) 149
StuI AGGCCT 2 cut(s) 12, 342
StyD4I CCNGG 2 cut(s) 117, 241
StyI CCWWGG 2 cut(s) 7, 357
TaqI TCGA 3 cut(s) 28, 206, 495
TaqII GACCGA 1 cut(s) 473
TasI AATT 3 cut(s) 366, 383, 489
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 4 cut(s) 30, 176, 208, 283
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 59
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 168, 227
TspRI CASTG 1 cut(s) 59
XapI RAATTY 2 cut(s) 366, 489
XhoI CTCGAG 1 cut(s) 494
XspI CTAG 4 cut(s) 59, 123, 186, 543
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.