Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029632

Physical Location & Seq

Genomic Coordinates Forward (+)

21140699 .. 21145181

Gene Structure 4483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTGGTTGAACAAGAAGCAATTGACATAAAAACCAAGTTTGCTAGTCACAGGCGTTCGATGCTGGAGGAAACTGATGGTGGTCAACTTGATGATATTGATGTTATTCCAAATGATGAAATGCTTTTGGCCTTCAGTGAAAAAGGGTATGTTAAGCGGATGAAGCCTAACACGTTTAATTTGCAAAATCGAGGTACCATTGGTAAATCTGTTGGGAAATTGAGGGTAAACGATGCAATGTCAGACTTTATTGTTTGTCACGCACATGATCATGTCTTGTACTTCAGTGATAAAGGAACAGTCTACTCAGCTCGTGCATATAAAATTCCTGAGTGCAGCCGCACAGCAGCTGGTACGCCACTGGTTCAGATCTTATCTCTGTCAGATGGCGAGAGAATTACATCTGTTATTCCTGTGAGTGAGTTTGCTGGAGATCAGTTTTTACTAATGCTCACAGTGAATGGCTACATAAAGAAGGTGTCTTTGAGTTCTTTTTCATCAGTCAGCTCAGTGTTGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

173

Amino Acids

19.1

Weight (kDa)

6.07

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_gyraseA_C	PF03989	40 - 86	2.1e-09	DNA gyrase C-terminal domain, beta-propeller
DNA_gyraseA_C	PF03989	90 - 140	2.9e-08	DNA gyrase C-terminal domain, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029632)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331301
rosa_samantha	Rh1AG117300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	157, 340
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	2 cut(s)	118, 268
AfaI	GTAC	3 cut(s)	196, 281, 355
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	519
AluBI	AGCT	3 cut(s)	311, 350, 507
AluI	AGCT	3 cut(s)	311, 350, 507
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	336, 347
ApoI	RAATTY	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	348, 359
BccI	CCATC	2 cut(s)	71, 380
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	3 cut(s)	337, 340, 348
BlsI	GCNGC	3 cut(s)	338, 341, 349
BmgBI	CACGTC	1 cut(s)	519
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	2 cut(s)	51, 223
BpmI	CTGGAG	2 cut(s)	86, 450
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	321, 321, 522
BseNI	ACTGG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	348, 359
BsgI	GTGCAG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	268, 369, 433
BspACI	CCGC	2 cut(s)	157, 340
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	3 cut(s)	320, 322, 521
BspLI	GGNNCC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	268, 369, 433
BssSI	CACGAG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	301, 457
BstDEI	CTNAG	3 cut(s)	307, 330, 508
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	271, 372, 436
BstMBI	GATC	3 cut(s)	268, 369, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 163
BstV1I	GCAGC	2 cut(s)	348, 359
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	131
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	5 cut(s)	142, 292, 359, 462, 516
CaiI	CAGNNNCTG	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	195, 280, 354
CviAII	CATG	2 cut(s)	266, 272
CviJI	RGCY	7 cut(s)	131, 166, 311, 339, 350, 465, 507
CviKI_1	RGCY	7 cut(s)	131, 166, 311, 339, 350, 465, 507
CviQI	GTAC	3 cut(s)	195, 280, 354
DdeI	CTNAG	3 cut(s)	307, 330, 508
DpnI	GATC	3 cut(s)	270, 371, 435
DpnII	GATC	3 cut(s)	268, 369, 433
Eco57I	CTGAAG	2 cut(s)	118, 268
FaeI	CATG	2 cut(s)	269, 275
FaiI	YATR	7 cut(s)	29, 150, 267, 273, 319, 321, 470
FatI	CATG	2 cut(s)	265, 271
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	337, 340, 348
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	3 cut(s)	337, 340, 348
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	337, 340, 348
GsuI	CTGGAG	2 cut(s)	86, 450
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	269, 275
HincII	GTYRAC	2 cut(s)	86, 516
HindII	GTYRAC	2 cut(s)	86, 516
Hpy166II	GTNNAC	4 cut(s)	86, 229, 304, 516
Hpy188I	TCNGA	3 cut(s)	244, 369, 385
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	4 cut(s)	86, 229, 304, 516
HpyAV	CCTTC	2 cut(s)	142, 469
HpyCH4III	ACNGT	2 cut(s)	301, 457
HpyCH4IV	ACGT	2 cut(s)	173, 518
HpyCH4V	TGCA	4 cut(s)	184, 236, 317, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 163
HpyF3I	CTNAG	3 cut(s)	307, 330, 508
HpySE526I	ACGT	2 cut(s)	173, 518
Hsp92II	CATG	2 cut(s)	269, 275
KpnI	GGTACC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	268, 369, 433
LpnPI	CCDG	7 cut(s)	37, 50, 336, 342, 347, 414, 426
Lsp1109I	GCAGC	2 cut(s)	348, 359
LweI	GCATC	2 cut(s)	51, 223
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	173, 518
MaeIII	GTNAC	2 cut(s)	47, 257
MalI	GATC	3 cut(s)	270, 371, 435
MboI	GATC	3 cut(s)	268, 369, 433
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	5 cut(s)	21, 178, 218, 324, 396
MnlI	CCTC	3 cut(s)	61, 185, 216
MseI	TTAA	2 cut(s)	153, 177
MslI	CAYNNNNRTG	2 cut(s)	264, 270
MspA1I	CMGCKG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	61, 163
NdeII	GATC	3 cut(s)	268, 369, 433
NlaIII	CATG	2 cut(s)	269, 275
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	47, 257
PkrI	GCNGC	3 cut(s)	338, 341, 349
PspN4I	GGNNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	196, 281, 355
RsaNI	GTAC	3 cut(s)	195, 280, 354
RseI	CAYNNNNRTG	2 cut(s)	264, 270
SaqAI	TTAA	2 cut(s)	153, 177
SatI	GCNGC	3 cut(s)	337, 340, 348
Sau3AI	GATC	3 cut(s)	268, 369, 433
SetI	ASST	7 cut(s)	176, 196, 313, 352, 480, 509, 521
SfaNI	GCATC	2 cut(s)	51, 223
SmiMI	CAYNNNNRTG	2 cut(s)	264, 270
Sse9I	AATT	5 cut(s)	21, 178, 218, 324, 396
SsiI	CCGC	2 cut(s)	157, 340
SspMI	CTAG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	301, 457
TaiI	ACGT	2 cut(s)	176, 521
TaqI	TCGA	2 cut(s)	59, 190
TasI	AATT	5 cut(s)	21, 178, 218, 324, 396
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	153, 177
Tru9I	TTAA	2 cut(s)	153, 177
TscAI	CASTG	5 cut(s)	142, 292, 366, 462, 516
TseFI	GTSAC	2 cut(s)	47, 257
TseI	GCWGC	2 cut(s)	336, 347
Tsp45I	GTSAC	2 cut(s)	47, 257
TspDTI	ATGAA	3 cut(s)	132, 176, 486
TspRI	CASTG	5 cut(s)	142, 292, 366, 462, 516
XapI	RAATTY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.