Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029629

Physical Location & Seq

Genomic Coordinates Reverse (-)

25568659 .. 25573595

Gene Structure 4937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGTTGAGGGACAGAATAAGTGAGAATGATGCTCAAAAACGGATAAATGCTCAGGTGTCACTCGATTTAAAGAGGACCATGGCAGACATAGTGATTGATAACAGTGGATCACAAGATGATTTAAAAGACAACTTTAAAATTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

61

Amino Acids

7.05

Weight (kDa)

4.85

Isoelectric Point (pI)

15.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	1 - 39	1.4e-06	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0029629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333451
rosa_roxburghii	Rroxscaffold_4G00317490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	171
AlwI	GGATC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	75
CviAII	CATG	2 cut(s)	79, 171
CviJI	RGCY	1 cut(s)	163
CviKI_1	RGCY	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DraI	TTTAAA	3 cut(s)	69, 123, 136
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	82, 174
FaiI	YATR	3 cut(s)	80, 89, 172
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	78, 170
Hin1II	CATG	2 cut(s)	82, 174
HpyCH4III	ACNGT	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	82, 174
Kzo9I	GATC	1 cut(s)	107
LpnPI	CCDG	1 cut(s)	38
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	57, 154
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	2 cut(s)	66, 145
MseI	TTAA	3 cut(s)	68, 122, 135
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	82, 174
NmuCI	GTSAC	2 cut(s)	57, 154
PspPI	GGNCC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	68, 122, 135
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	75
SetI	ASST	2 cut(s)	57, 156
SfaNI	GCATC	1 cut(s)	19
SgeI	CNNG	5 cut(s)	65, 74, 91, 125, 178
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	138
Tru1I	TTAA	3 cut(s)	68, 122, 135
Tru9I	TTAA	3 cut(s)	68, 122, 135
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	57, 154
Tsp45I	GTSAC	2 cut(s)	57, 154
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.