Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0029629

Physical Location & Seq

Genomic Coordinates Forward (+)

42768182 .. 42771688

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAACTTGTCACCAAATTTGGAGCTTGATGGCAGAGTAACCACCAAGCTCAACCATGCTCCGAGACTCATGTTGAGGGACAGAATAAGTGAGAATGATGCTCGAAAACGGATAAATGCTCAGGTGTCACTCGATTTAAAGAGGACCATGGCAGACATAGTGATTGATAACAGTGGATCACAAGATGATTTAAAAGACTACTTTAAAATTGTGCTATTTGAGGTCACAAAGCCCTTGACATGGACTGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

84

Amino Acids

9.7

Weight (kDa)

6.56

Isoelectric Point (pI)

20.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	21 - 62	1.3e-07	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333451
rosa_roxburghii	Rroxscaffold_4G00317490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	25, 49
AluI	AGCT	2 cut(s)	25, 49
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	1 cut(s)	144
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	176
Bsp19I	CCATGG	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	144
CviAII	CATG	4 cut(s)	56, 70, 148, 240
CviJI	RGCY	3 cut(s)	25, 49, 232
CviKI_1	RGCY	3 cut(s)	25, 49, 232
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
DraI	TTTAAA	3 cut(s)	138, 192, 205
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	59, 73, 151, 243
FaiI	YATR	5 cut(s)	57, 71, 149, 158, 241
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	4 cut(s)	55, 69, 147, 239
Hin1II	CATG	4 cut(s)	59, 73, 151, 243
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	59, 73, 151, 243
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	22, 64
LpnPI	CCDG	1 cut(s)	107
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	4 cut(s)	9, 37, 126, 223
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MluCI	AATT	2 cut(s)	16, 207
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	69, 135, 214
MseI	TTAA	3 cut(s)	137, 191, 204
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	4 cut(s)	59, 73, 151, 243
NmuCI	GTSAC	3 cut(s)	9, 126, 223
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	137, 191, 204
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	60
SetI	ASST	4 cut(s)	27, 51, 126, 225
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	16, 207
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	103, 132
TasI	AATT	2 cut(s)	16, 207
Tru1I	TTAA	3 cut(s)	137, 191, 204
Tru9I	TTAA	3 cut(s)	137, 191, 204
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	3 cut(s)	9, 126, 223
Tsp45I	GTSAC	3 cut(s)	9, 126, 223
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.