Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029627

Physical Location & Seq

Genomic Coordinates Reverse (-)

26711954 .. 26713895

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAATCTCACTGATGGAGGTCTTCCCATTCAAGGAAAATCTTATCTTATGAGAATTGATGCAGACGGGATTTTTCGTCTGTATTCATATGATCTGAAACAGGAAGGACATTGGTCTATTGAATGGCCATCTTCTCCGAATAGATGTTCCCCTAAAGGTGTATGCGGAATTAATAGCTATTGTGTCACAATGGGGGCAGCAATTGACTGTAGATGTCTTCCTAGATTCAAATCTGTCAACCCAGGAAATCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

85

Amino Acids

9.4

Weight (kDa)

8.33

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029627)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334531
rosa_samantha	Rh6AG342800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	32, 122, 229
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	14, 209
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	8, 136
BciT130I	CCWGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	49
BoxI	GACNNNNGTC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	14, 209
BsaBI	GATNNNNATC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	32
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	209
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	14, 209
BsuRI	GGCC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	9
CviJI	RGCY	3 cut(s)	127, 177, 254
CviKI_1	RGCY	3 cut(s)	127, 177, 254
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	241
FaiI	YATR	4 cut(s)	50, 88, 90, 163
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	4, 225
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	96, 138
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	3 cut(s)	86, 228, 236
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	14, 123, 209
MfeI	CAATTG	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	3 cut(s)	54, 168, 201
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	1 cut(s)	11
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	4, 225
PkrI	GCNGC	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	3 cut(s)	22, 160, 179
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	208
SgeI	CNNG	5 cut(s)	44, 79, 113, 234, 254
Sse9I	AATT	3 cut(s)	54, 168, 201
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	209
TasI	AATT	3 cut(s)	54, 168, 201
TfiI	GAWTC	2 cut(s)	4, 225
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	17, 75
TspRI	CASTG	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	171
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.