PPR repeat
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0336661 |
| rosa_multiflora | Rmu_sc0000907.1_g000006 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 93, 104 |
| AclWI | GGATC | 1 cut(s) | 134 |
| AgsI | TTSAA | 1 cut(s) | 114 |
| AjnI | CCWGG | 1 cut(s) | 44 |
| AluBI | AGCT | 2 cut(s) | 14, 137 |
| AluI | AGCT | 2 cut(s) | 14, 137 |
| AlwI | GGATC | 1 cut(s) | 134 |
| AoxI | GGCC | 1 cut(s) | 42 |
| AspLEI | GCGC | 1 cut(s) | 22 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| BciT130I | CCWGG | 1 cut(s) | 46 |
| BfaI | CTAG | 1 cut(s) | 138 |
| Bme1390I | CCNGG | 1 cut(s) | 46 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BmrFI | CCNGG | 1 cut(s) | 46 |
| BmsI | GCATC | 2 cut(s) | 54, 147 |
| Bsa29I | ATCGAT | 1 cut(s) | 129 |
| Bse3DI | GCAATG | 2 cut(s) | 29, 102 |
| BseBI | CCWGG | 1 cut(s) | 46 |
| BseCI | ATCGAT | 1 cut(s) | 129 |
| BseGI | GGATG | 2 cut(s) | 82, 162 |
| BseMI | GCAATG | 2 cut(s) | 29, 102 |
| BseRI | GAGGAG | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 44 |
| BshVI | ATCGAT | 1 cut(s) | 129 |
| BsnI | GGCC | 1 cut(s) | 44 |
| Bsp143I | GATC | 1 cut(s) | 126 |
| BspACI | CCGC | 2 cut(s) | 93, 104 |
| BspANI | GGCC | 1 cut(s) | 44 |
| BspDI | ATCGAT | 1 cut(s) | 129 |
| BspPI | GGATC | 1 cut(s) | 134 |
| BsrDI | GCAATG | 2 cut(s) | 29, 102 |
| BssMI | GATC | 1 cut(s) | 126 |
| Bst2UI | CCWGG | 1 cut(s) | 46 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 101 |
| BstF5I | GGATG | 2 cut(s) | 82, 162 |
| BstHHI | GCGC | 1 cut(s) | 22 |
| BstKTI | GATC | 1 cut(s) | 129 |
| BstMBI | GATC | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 101 |
| BstNI | CCWGG | 1 cut(s) | 46 |
| BstSCI | CCNGG | 1 cut(s) | 44 |
| Bsu15I | ATCGAT | 1 cut(s) | 129 |
| BsuRI | GGCC | 1 cut(s) | 44 |
| BsuTUI | ATCGAT | 1 cut(s) | 129 |
| BtsCI | GGATG | 2 cut(s) | 82, 162 |
| CfoI | GCGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| ClaI | ATCGAT | 1 cut(s) | 129 |
| CviJI | RGCY | 4 cut(s) | 14, 44, 52, 137 |
| CviKI_1 | RGCY | 4 cut(s) | 14, 44, 52, 137 |
| DpnI | GATC | 1 cut(s) | 128 |
| DpnII | GATC | 1 cut(s) | 126 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| EcoRII | CCWGG | 1 cut(s) | 44 |
| FokI | GGATG | 2 cut(s) | 89, 169 |
| FspBI | CTAG | 1 cut(s) | 138 |
| GlaI | GCGC | 1 cut(s) | 21 |
| HaeIII | GGCC | 1 cut(s) | 44 |
| HhaI | GCGC | 1 cut(s) | 22 |
| Hin6I | GCGC | 1 cut(s) | 20 |
| HinP1I | GCGC | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 1 cut(s) | 90 |
| Hpy188III | TCNNGA | 1 cut(s) | 114 |
| Hpy8I | GTNNAC | 1 cut(s) | 90 |
| HpyAV | CCTTC | 1 cut(s) | 159 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 101 |
| HspAI | GCGC | 1 cut(s) | 20 |
| Kzo9I | GATC | 1 cut(s) | 126 |
| LpnPI | CCDG | 4 cut(s) | 2, 31, 58, 109 |
| LweI | GCATC | 2 cut(s) | 54, 147 |
| MaeI | CTAG | 1 cut(s) | 138 |
| MalI | GATC | 1 cut(s) | 128 |
| MboI | GATC | 1 cut(s) | 126 |
| MnlI | CCTC | 4 cut(s) | 24, 31, 34, 42 |
| MseI | TTAA | 1 cut(s) | 8 |
| MspR9I | CCNGG | 1 cut(s) | 46 |
| MvaI | CCWGG | 1 cut(s) | 46 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 101 |
| NdeII | GATC | 1 cut(s) | 126 |
| Psp6I | CCWGG | 1 cut(s) | 44 |
| PspGI | CCWGG | 1 cut(s) | 44 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| SaqAI | TTAA | 1 cut(s) | 8 |
| Sau3AI | GATC | 1 cut(s) | 126 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| ScrFI | CCNGG | 1 cut(s) | 46 |
| SetI | ASST | 2 cut(s) | 16, 139 |
| SfaNI | GCATC | 2 cut(s) | 54, 147 |
| SgeI | CNNG | 9 cut(s) | 29, 57, 58, 80, 99, 126, 136, 150, 174 |
| SinI | GGWCC | 1 cut(s) | 90 |
| SsiI | CCGC | 2 cut(s) | 93, 104 |
| SspMI | CTAG | 1 cut(s) | 138 |
| StyD4I | CCNGG | 1 cut(s) | 44 |
| TaqI | TCGA | 1 cut(s) | 129 |
| Tru1I | TTAA | 1 cut(s) | 8 |
| Tru9I | TTAA | 1 cut(s) | 8 |
| TspDTI | ATGAA | 1 cut(s) | 147 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| XspI | CTAG | 1 cut(s) | 138 |