Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000907.1

Orthogroup ID

OG0029528

Physical Location & Seq

Genomic Coordinates Reverse (-)

21995 .. 22426

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000907.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggttttaacagctctggtgcaatgtgggaggattgaggaggccaggaggctgttttgtttgatacctgaaagggatgtaatttcgtggaccgcaatggttgcggagtgttcaagaaatggcaggatcgatgaagctagagaagtctttgataggatgccgagaaggaatgtggtgtcgtggactgcaatgatcacgggttatgctcagaatggaaggctgaaggatgctcttgaattgtttgagaggatgccggagagggatatgccttcatggaatacgatggttactggctttattcagaatggggatttaaagcgggcatggaacttatttatgaaaatgccacagaagaatgctatgtcctggactacaatgatcactgggtgtgtacaagatggaaaaaatgaagatgcattgatgattttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

143

Amino Acids

16.57

Weight (kDa)

7.64

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029528)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0336661
rosa_multiflora	Rmu_sc0000907.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	93, 104, 319
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	242
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	114, 236
AjnI	CCWGG	2 cut(s)	44, 365
AluBI	AGCT	2 cut(s)	14, 137
AluI	AGCT	2 cut(s)	14, 137
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	90
BccI	CCATC	2 cut(s)	277, 392
BciT130I	CCWGG	2 cut(s)	46, 367
BclI	TGATCA	2 cut(s)	192, 378
BfaI	CTAG	1 cut(s)	138
Bme1390I	CCNGG	2 cut(s)	46, 367
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	46, 367
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	4 cut(s)	147, 217, 240, 403
BmuI	ACTGGG	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	295, 388
Bse3DI	GCAATG	3 cut(s)	29, 102, 195
BseBI	CCWGG	2 cut(s)	46, 367
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	4 cut(s)	82, 162, 232, 255
BseMI	GCAATG	3 cut(s)	29, 102, 195
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	295, 388
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	44
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	126, 192, 378
BspACI	CCGC	3 cut(s)	93, 104, 319
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	129
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	3 cut(s)	29, 102, 195
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	295, 388
BssMI	GATC	3 cut(s)	126, 192, 378
Bst2UI	CCWGG	2 cut(s)	46, 367
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	4 cut(s)	82, 162, 232, 255
BstKTI	GATC	3 cut(s)	129, 195, 381
BstMBI	GATC	3 cut(s)	126, 192, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	2 cut(s)	46, 367
BstSCI	CCNGG	2 cut(s)	44, 365
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	44
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	82, 162, 232, 255
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	2 cut(s)	273, 324
CviJI	RGCY	6 cut(s)	14, 44, 52, 137, 220, 294
CviKI_1	RGCY	6 cut(s)	14, 44, 52, 137, 220, 294
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	128, 194, 380
DpnII	GATC	3 cut(s)	126, 192, 378
DraI	TTTAAA	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	44, 365
EcoT22I	ATGCAT	1 cut(s)	418
FaeI	CATG	2 cut(s)	276, 327
FaiI	YATR	6 cut(s)	204, 266, 274, 325, 338, 362
FatI	CATG	2 cut(s)	272, 323
FauI	CCCGC	1 cut(s)	312
FbaI	TGATCA	2 cut(s)	192, 378
FokI	GGATG	4 cut(s)	89, 169, 239, 262
FspBI	CTAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	2 cut(s)	276, 327
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	90, 183, 392
Hpy188I	TCNGA	2 cut(s)	210, 303
Hpy188III	TCNNGA	2 cut(s)	114, 233
Hpy8I	GTNNAC	3 cut(s)	90, 183, 392
HpyAV	CCTTC	4 cut(s)	159, 210, 217, 279
HpyCH4V	TGCA	3 cut(s)	22, 188, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	276, 327
Ksp22I	TGATCA	2 cut(s)	192, 378
Kzo9I	GATC	3 cut(s)	126, 192, 378
LweI	GCATC	4 cut(s)	147, 217, 240, 403
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	128, 194, 380
MboI	GATC	3 cut(s)	126, 192, 378
MboII	GAAGA	2 cut(s)	364, 422
MluCI	AATT	2 cut(s)	81, 236
MnlI	CCTC	6 cut(s)	24, 31, 34, 42, 240, 252
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	2 cut(s)	8, 314
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	46, 367
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	46, 367
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	3 cut(s)	126, 192, 378
NlaIII	CATG	2 cut(s)	276, 327
NmeAIII	GCCGAG	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	418
PctI	GAATGC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	44, 365
PspGI	CCWGG	2 cut(s)	44, 365
PspPI	GGNCC	1 cut(s)	90
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	8, 314
Sau3AI	GATC	3 cut(s)	126, 192, 378
Sau96I	GGNCC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	46, 367
SetI	ASST	3 cut(s)	16, 70, 139
SfaNI	GCATC	4 cut(s)	147, 217, 240, 403
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	2 cut(s)	81, 236
SsiI	CCGC	3 cut(s)	93, 104, 319
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	44, 365
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	81, 236
TatI	WGTACW	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	8, 314
Tru9I	TTAA	2 cut(s)	8, 314
TscAI	CASTG	1 cut(s)	388
TspDTI	ATGAA	4 cut(s)	147, 261, 353, 423
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	90
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.