Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029608

Physical Location & Seq

Genomic Coordinates Reverse (-)

31424361 .. 31425275

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAGTTTTCGGCTATTTCCAAAGGCACTGATGCTTATGTTGAGTTATTTGAAGACTCTTCTTCTCCCATATCACAGCGTATCAAGTTCATAAACCTCCCACATGTCAATATGGACCATACGGAAGGCAGTGTCCGCAATAGCTTGATCGGTAATTCGTTGAAATCCAAGACTCAGCGAGACCTAGAATCGCATGCCCTTCATGCGCTTTCATCTGATGCCGAGATCCCTCCCGTATATCCGGTAGGACCCTTACTTAACCTTAACACTAATGAAAGTCGTGTGGATTCCGATGAGGCCAAGCGGAAGTATGATATCTTGAAATGGCTAGATGATCAGCCTCTATTGTCTGTAGTGTTCTTGTGCTTTGGAAGCATGGGAAGCTTTGGTGCGCAAGGACCAGGTTGGGGCCCGCAAGTTGCCGTCTTGGCTTATCCATCTGTTGGAGGATTTGTATCCCACTGTGGGTGGAATTCCACGCTTGAGAGTCTTTGGCATGGTGTGCCGGTTGCCACGTGGCCATTGTACGCGGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

179

Amino Acids

19.62

Weight (kDa)

5.41

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	136 - 179	8.9e-12	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339931
rosa_laevigata	RLG00000029249

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	1 cut(s)	530
AciI	CCGC	4 cut(s)	136, 304, 413, 530
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	472
AcvI	CACGTG	1 cut(s)	516
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	3 cut(s)	407, 443, 465
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	53, 163, 322
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	2 cut(s)	144, 384
AluI	AGCT	2 cut(s)	144, 384
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	297, 409, 518
ApaI	GGGCCC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	208, 394
AspS9I	GGNCC	5 cut(s)	115, 248, 398, 409, 410
AvaII	GGWCC	3 cut(s)	115, 248, 398
BaeGI	GKGCMC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	413
BbrPI	CACGTG	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	466
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	185, 329
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	3 cut(s)	115, 248, 398
BmgT120I	GGNCC	5 cut(s)	115, 248, 398, 409, 410
BmiI	GGNNCC	3 cut(s)	250, 410, 411
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	22, 208
BpiI	GAAGAC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 443, 465
Bse118I	RCCGGY	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	454
BseLI	CCNNNNNNNGG	3 cut(s)	407, 443, 465
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	299, 411, 520
BsiSI	CCGG	2 cut(s)	242, 506
BslI	CCNNNNNNNGG	3 cut(s)	407, 443, 465
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	3 cut(s)	299, 411, 520
Bso31I	GGTCTC	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	147, 225, 334
BspACI	CCGC	4 cut(s)	136, 304, 413, 530
BspANI	GGCC	3 cut(s)	299, 411, 520
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	250, 410, 411
BspPI	GGATC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	505
BssMI	GATC	3 cut(s)	147, 225, 334
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstBAI	YACGTR	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	195, 413
BstDEI	CTNAG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	2 cut(s)	208, 394
BstKTI	GATC	3 cut(s)	150, 228, 337
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	147, 225, 334
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 203, 372, 381, 428, 502
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	2 cut(s)	107, 197
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	530
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	3 cut(s)	299, 411, 520
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	27, 136, 460
Cac8I	GCNNGC	2 cut(s)	195, 413
CfoI	GCGC	2 cut(s)	208, 394
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	5 cut(s)	115, 248, 398, 409, 410
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	5 cut(s)	104, 194, 203, 376, 497
CviJI	RGCY	9 cut(s)	14, 144, 299, 328, 340, 384, 411, 431, 520
CviKI_1	RGCY	9 cut(s)	14, 144, 299, 328, 340, 384, 411, 431, 520
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	149, 227, 336
DpnII	GATC	3 cut(s)	147, 225, 334
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	413
Eco31I	GGTCTC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	3 cut(s)	115, 248, 398
Eco72I	CACGTG	1 cut(s)	516
EcoO109I	RGGNCCY	2 cut(s)	248, 409
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	413
FaeI	CATG	5 cut(s)	107, 197, 206, 379, 500
FatI	CATG	5 cut(s)	103, 193, 202, 375, 496
FauI	CCCGC	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	413
FspBI	CTAG	2 cut(s)	185, 329
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	2 cut(s)	207, 393
HaeIII	GGCC	3 cut(s)	299, 411, 520
HapII	CCGG	2 cut(s)	242, 506
HhaI	GCGC	2 cut(s)	208, 394
Hin1II	CATG	5 cut(s)	107, 197, 206, 379, 500
Hin6I	GCGC	2 cut(s)	206, 392
HinP1I	GCGC	2 cut(s)	206, 392
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	5 cut(s)	56, 172, 188, 287, 487
HpaII	CCGG	2 cut(s)	242, 506
Hpy188I	TCNGA	2 cut(s)	217, 292
Hpy188III	TCNNGA	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	119, 209
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4IV	ACGT	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 203, 372, 381, 428, 502
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	5 cut(s)	107, 197, 206, 379, 500
HspAI	GCGC	2 cut(s)	206, 392
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	147, 225, 334
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	4 cut(s)	255, 387, 414, 519
LweI	GCATC	2 cut(s)	22, 208
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	2 cut(s)	185, 329
MaeII	ACGT	1 cut(s)	515
MalI	GATC	3 cut(s)	149, 227, 336
MboI	GATC	3 cut(s)	147, 225, 334
MboII	GAAGA	3 cut(s)	51, 54, 65
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	2 cut(s)	154, 472
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	3 cut(s)	50, 166, 496
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	107, 240, 289, 351, 440
Mox20I	TGGCCA	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	520
MseI	TTAA	2 cut(s)	258, 264
Msp20I	TGGCCA	1 cut(s)	520
MspI	CCGG	2 cut(s)	242, 506
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	6 cut(s)	135, 203, 372, 381, 428, 502
NdeII	GATC	3 cut(s)	147, 225, 334
NlaIII	CATG	5 cut(s)	107, 197, 206, 379, 500
NlaIV	GGNNCC	3 cut(s)	250, 410, 411
NmeAIII	GCCGAG	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	393
NspI	RCATGY	2 cut(s)	107, 197
PaeI	GCATGC	1 cut(s)	197
PciI	ACATGT	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	188, 287
PflMI	CCANNNNNTGG	1 cut(s)	443
PleI	GAGTC	3 cut(s)	50, 166, 495
PmaCI	CACGTG	1 cut(s)	516
PmlI	CACGTG	1 cut(s)	516
PpsI	GAGTC	3 cut(s)	50, 166, 495
Ppu21I	YACGTR	1 cut(s)	516
PpuMI	RGGWCCY	1 cut(s)	248
PscI	ACATGT	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	400
PspCI	CACGTG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	250, 410, 411
PspOMI	GGGCCC	1 cut(s)	409
PspPI	GGNCC	5 cut(s)	115, 248, 398, 409, 410
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SaqAI	TTAA	2 cut(s)	258, 264
Sau3AI	GATC	3 cut(s)	147, 225, 334
Sau96I	GGNCC	5 cut(s)	115, 248, 398, 409, 410
SchI	GAGTC	3 cut(s)	50, 166, 496
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	7 cut(s)	99, 146, 186, 264, 386, 406, 518
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	22, 208
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	3 cut(s)	115, 248, 398
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	2 cut(s)	154, 472
SsiI	CCGC	4 cut(s)	136, 304, 413, 530
SspMI	CTAG	2 cut(s)	185, 329
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	464
TaiI	ACGT	1 cut(s)	518
TasI	AATT	2 cut(s)	154, 472
TfiI	GAWTC	2 cut(s)	188, 287
Tru1I	TTAA	2 cut(s)	258, 264
Tru9I	TTAA	2 cut(s)	258, 264
TscAI	CASTG	3 cut(s)	34, 136, 467
TspDTI	ATGAA	5 cut(s)	17, 79, 191, 201, 288
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	3 cut(s)	34, 136, 467
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	3 cut(s)	115, 248, 398
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	2 cut(s)	107, 197
XspI	CTAG	2 cut(s)	185, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.