Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0029608

Physical Location & Seq

Genomic Coordinates Reverse (-)

35410276 .. 35410769

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGTTTTCGGCTATTTCCAAAGGCACTGATGCTTATGTCGAGTTATTTGCAGACTCTTCTTCTCCCATATCACAGCTTATCAAGATCATAAACCTCCCACATGTCAATATGGACCATACGGAAGGCAGTGTCCGCAATAGCTTGATCGGACCTTTACTTAACCTTAACACTAATGAAAGTCGTGTGGATTCCGATGAGGCCAAGCAGAAGTATGATATCTTGAAATGGCTAAATGATCAGCCTCTTTTGTCTGTAGTGTTCTTGTGCTTTGGAAGCATGGGAAGCTTTGGTGCTAGAGGACCAGGTGAAAGAGATCGCCCACGCCCACGCCCTGGAGAATGCGGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

118

Amino Acids

12.86

Weight (kDa)

6.07

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339931
rosa_laevigata	RLG00000029249

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	2 cut(s)	136, 345
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	304, 334
AluBI	AGCT	3 cut(s)	79, 144, 288
AluI	AGCT	3 cut(s)	79, 144, 288
AoxI	GGCC	2 cut(s)	201, 347
AspS9I	GGNCC	4 cut(s)	115, 152, 302, 347
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	3 cut(s)	115, 152, 302
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	306, 336
BclI	TGATCA	1 cut(s)	238
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	306, 336
Bme18I	GGWCC	3 cut(s)	115, 152, 302
BmgT120I	GGNCC	4 cut(s)	115, 152, 302, 347
BmrFI	CCNGG	2 cut(s)	306, 336
BmsI	GCATC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	306, 336
BseDI	CCNNGG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	203, 349
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	203, 349
Bsp143I	GATC	4 cut(s)	87, 147, 238, 316
BspACI	CCGC	2 cut(s)	136, 345
BspANI	GGCC	2 cut(s)	203, 349
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	4 cut(s)	87, 147, 238, 316
Bst2UI	CCWGG	2 cut(s)	306, 336
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	347
BstKTI	GATC	4 cut(s)	90, 150, 241, 319
BstMBI	GATC	4 cut(s)	87, 147, 238, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 276, 285
BstNI	CCWGG	2 cut(s)	306, 336
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	304, 334
BstSFI	CTRYAG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	203, 349
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	27, 136
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	4 cut(s)	115, 152, 302, 347
CsiI	ACCWGGT	1 cut(s)	304
CviAII	CATG	2 cut(s)	104, 280
CviJI	RGCY	8 cut(s)	14, 79, 144, 203, 232, 244, 288, 349
CviKI_1	RGCY	8 cut(s)	14, 79, 144, 203, 232, 244, 288, 349
DpnI	GATC	4 cut(s)	89, 149, 240, 318
DpnII	GATC	4 cut(s)	87, 147, 238, 316
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	3 cut(s)	115, 152, 302
EcoRII	CCWGG	2 cut(s)	304, 334
EcoRV	GATATC	1 cut(s)	220
FaeI	CATG	2 cut(s)	107, 283
FaiI	YATR	9 cut(s)	39, 71, 92, 105, 113, 120, 216, 281, 352
FatI	CATG	2 cut(s)	103, 279
FauI	CCCGC	1 cut(s)	338
FbaI	TGATCA	1 cut(s)	238
FspBI	CTAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	203, 349
Hin1II	CATG	2 cut(s)	107, 283
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	2 cut(s)	56, 191
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	152, 196
Hpy188III	TCNNGA	2 cut(s)	85, 223
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 276, 285
Hsp92II	CATG	2 cut(s)	107, 283
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	87, 147, 238, 316
LpnPI	CCDG	4 cut(s)	291, 318, 321, 348
LweI	GCATC	1 cut(s)	22
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	297
MalI	GATC	4 cut(s)	89, 149, 240, 318
MboI	GATC	4 cut(s)	87, 147, 238, 316
MboII	GAAGA	2 cut(s)	51, 54
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	107, 193, 255, 293
MseI	TTAA	2 cut(s)	162, 168
MspR9I	CCNGG	2 cut(s)	306, 336
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	306, 336
MwoI	GCNNNNNNNGC	3 cut(s)	135, 276, 285
NdeII	GATC	4 cut(s)	87, 147, 238, 316
NlaIII	CATG	2 cut(s)	107, 283
NspI	RCATGY	1 cut(s)	107
PciI	ACATGT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	335
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	304, 334
PspGI	CCWGG	2 cut(s)	304, 334
PspPI	GGNCC	4 cut(s)	115, 152, 302, 347
SaqAI	TTAA	2 cut(s)	162, 168
Sau3AI	GATC	4 cut(s)	87, 147, 238, 316
Sau96I	GGNCC	4 cut(s)	115, 152, 302, 347
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	306, 336
SetI	ASST	7 cut(s)	81, 99, 146, 157, 168, 290, 310
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	3 cut(s)	115, 152, 302
SsiI	CCGC	2 cut(s)	136, 345
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	304, 334
TaqI	TCGA	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	162, 168
Tru9I	TTAA	2 cut(s)	162, 168
TscAI	CASTG	2 cut(s)	34, 136
TspDTI	ATGAA	2 cut(s)	17, 192
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	34, 136
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	3 cut(s)	115, 152, 302
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.