RchiOBHm_Chr1g0341031

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
32711997 .. 32713223
1227 bp
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UTR
Exon/CDS
Intron
PRQ56776

Sequence Viewer

Length: 153 bp
ATGAAAGAAGGTCTTAAGTTTTCCGGCCATATTCTGTGTTTTCCGGCTACCTTCGATTCCAACTCAGGTATCAAACTTGTTTCCCTTGTCGAGTTCTACCTCGCTATATGCTTGAATTTGAATTTGAATTTGGTTGAGTTTAGAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.68

Weight (kDa)

7.82

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021321)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0341031
rosa_multiflora Rmu_sc0004566.1_g000004
rosa_samantha Rh5BG448900 Rh5CG471100 Rh5DG462400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 3 cut(s) 115, 121, 127
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 3 cut(s) 115, 121, 127
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AoxI GGCC 1 cut(s) 25
ApoI RAATTY 3 cut(s) 115, 121, 127
BaeI ACNNNNGTAYC 2 cut(s) 52, 85
BfrI CTTAAG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 24, 44
BsnI GGCC 1 cut(s) 27
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 14
BstAFI CTTAAG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 27
CviJI RGCY 2 cut(s) 27, 47
CviKI_1 RGCY 2 cut(s) 27, 47
DdeI CTNAG 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 25
FaiI YATR 3 cut(s) 30, 107, 109
FalI AAGNNNNNCTT 1 cut(s) 29
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 24, 44
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 24, 44
HpyAV CCTTC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 64
LpnPI CCDG 3 cut(s) 37, 51, 57
MluCI AATT 4 cut(s) 115, 121, 127, 148
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 1 cut(s) 110
MseI TTAA 1 cut(s) 15
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 2 cut(s) 24, 44
PfeI GAWTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 15
SetI ASST 4 cut(s) 13, 53, 70, 102
SgeI CNNG 8 cut(s) 36, 56, 78, 89, 98, 103, 113, 124
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 4 cut(s) 115, 121, 127, 148
TaqI TCGA 2 cut(s) 54, 90
TasI AATT 4 cut(s) 115, 121, 127, 148
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 14
XapI RAATTY 3 cut(s) 115, 121, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.