Rh5BG448900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0021321
Physical Location & Seq
Forward (+)
71958835 .. 71959206
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG448900.1

Sequence Viewer

Length: 372 bp
ATGCGATTTGAAATCTCTTCTTCTTCTACCCAGATCTCTATGCTCTCTTCTCTTCTTCTTCCAGACGCAGCCGCTCTGTTCATTCTCATCCTTCAACCTTCAATTTCTCTCAAATGGTTGCTGATTCGTCGTCTTCGTCACAATTCGCTCTCGATTGAACTCTCTTCAGGTTTGAGCTCCTCTCGATTCTGCTTTAGGTCTTGCAGCCCGAACCTCCCTGGGTCTTCAATTCGGAATTTGAATTCGTGTTTTTGGTTTGCTTTAGCTTTCGGTCCATTTGGTGCTGAGAATTGGAGGAGAGAACAAGAAAGGGAAAGCCACCATCACATTCCTCCAGAGCCTTTGTTAATCAACACCTGTATATGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.01

Weight (kDa)

8.97

Isoelectric Point (pI)

79.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021321)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0341031
rosa_multiflora Rmu_sc0004566.1_g000004
rosa_samantha Rh5BG448900 Rh5CG471100 Rh5DG462400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 1 cut(s) 72
AcsI RAATTY 2 cut(s) 235, 241
AcuI CTGAAG 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 6 cut(s) 11, 95, 102, 158, 228, 241
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 2 cut(s) 177, 266
AluI AGCT 2 cut(s) 177, 266
Alw21I GWGCWC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 68, 204
ApoI RAATTY 2 cut(s) 235, 241
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 125, 216
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 80, 216
BccI CCATC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 219
BglII AGATCT 1 cut(s) 33
BisI GCNGC 3 cut(s) 69, 72, 205
BlsI GCNGC 3 cut(s) 70, 73, 206
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 219
BpiI GAAGAC 2 cut(s) 125, 216
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BpmI CTGGAG 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 217, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 217, 218
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 169, 310
BseXI GCAGC 2 cut(s) 80, 216
BsiHKAI GWGCWC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 217, 218
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 4 cut(s) 22, 52, 57, 169
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 80, 216
BstV2I GAAGAC 2 cut(s) 125, 216
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BtsCI GGATG 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 74
CviJI RGCY 6 cut(s) 71, 177, 207, 266, 318, 340
CviKI_1 RGCY 6 cut(s) 71, 177, 207, 266, 318, 340
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 4 cut(s) 22, 52, 57, 169
EarI CTCTTC 4 cut(s) 22, 52, 57, 169
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 179
FaiI YATR 3 cut(s) 41, 362, 364
Fnu4HI GCNGC 3 cut(s) 69, 72, 205
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 69, 72, 205
GluI GCNGC 3 cut(s) 69, 72, 205
GsuI CTGGAG 1 cut(s) 318
HgaI GACGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 124, 186
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 4 cut(s) 62, 151, 183, 335
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 101, 108
HpyCH4V TGCA 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 285
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 6 cut(s) 44, 75, 153, 204, 231, 348
Lsp1109I GCAGC 2 cut(s) 80, 216
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 74
MboI GATC 1 cut(s) 33
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 6 cut(s) 102, 142, 228, 235, 241, 289
MnlI CCTC 4 cut(s) 190, 224, 288, 342
MseI TTAA 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
NdeII GATC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 137
PasI CCCWGGG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PfeI GAWTC 2 cut(s) 124, 186
PkrI GCNGC 3 cut(s) 70, 73, 206
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 33
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 3 cut(s) 69, 72, 205
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 179
SetI ASST 7 cut(s) 100, 172, 179, 200, 216, 268, 359
SinI GGWCC 1 cut(s) 272
Sse9I AATT 6 cut(s) 102, 142, 228, 235, 241, 289
SsiI CCGC 1 cut(s) 72
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 217
TaqI TCGA 2 cut(s) 152, 184
TaqII GACCGA 1 cut(s) 260
TasI AATT 6 cut(s) 102, 142, 228, 235, 241, 289
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 124, 186
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 68, 204
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 235, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.