Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029568

Physical Location & Seq

Genomic Coordinates Reverse (-)

33472506 .. 33473033

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATCCCATATACTAACTTGGGTGTGGGAATGTGGGTACCAAATGCAAAGGAAAACATGTGGATTTTCTTTAAACCACGTTCAAAATATCTTTGGATAACAACTGCTGCTTTCTTTGTCCTTACCGGCTTTGTTGTCTGGATAATTGAGCATCCTACTAATGGAAACTTCCAAGGCACAGCAGCTGGAACAGTATTCTGGTTCTCCTTCTCTTCTCTTTTGTTCACTTATAATGCTAGCAAAGGACATGACATAAACTTTCTTGTTCATTCTGCAGCGGAGAAGTTTTCAAATAATTTGGCAAAGTTTGTAGTGATCATATGGGGTGTTTTTAGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005267 GO:0005272 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006816 GO:0006873 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0019722 GO:0019725 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030003 GO:0033993 GO:0034220 GO:0035556 GO:0035725 GO:0038023 GO:0042221 GO:0042592 GO:0043200 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

113

Amino Acids

12.82

Weight (kDa)

9.46

Isoelectric Point (pI)

5.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029568)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341711 RchiOBHm_Chr5g0063051

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	278
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	84, 291
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	107, 182, 275
Asp718I	GGTACC	1 cut(s)	37
AsuNHI	GCTAGC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	94, 194, 287
BclI	TGATCA	1 cut(s)	315
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	3 cut(s)	108, 183, 276
BlsI	GCNGC	3 cut(s)	109, 184, 277
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	160
BmtI	GCTAGC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	94, 194, 287
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	3, 315
BspACI	CCGC	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	3, 315
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	6, 318
BstMBI	GATC	2 cut(s)	3, 315
BstNSI	RCATGY	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	94, 194, 287
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	2 cut(s)	58, 248
CviJI	RGCY	2 cut(s)	129, 185
CviKI_1	RGCY	2 cut(s)	129, 185
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	5, 317
DpnII	GATC	2 cut(s)	3, 315
DraI	TTTAAA	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	61, 251
FaiI	YATR	8 cut(s)	10, 12, 59, 231, 249, 254, 320, 322
FatI	CATG	2 cut(s)	57, 247
FauNDI	CATATG	1 cut(s)	320
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	108, 183, 276
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	108, 183, 276
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	3 cut(s)	108, 183, 276
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	61, 251
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	47, 275
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	61, 251
KpnI	GGTACC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	3, 315
LpnPI	CCDG	4 cut(s)	124, 139, 171, 184
Lsp1109I	GCAGC	3 cut(s)	94, 194, 287
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	79
MalI	GATC	2 cut(s)	5, 317
MboI	GATC	2 cut(s)	3, 315
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	2 cut(s)	144, 295
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	185, 278
MspI	CCGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	2 cut(s)	3, 315
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	61, 251
NlaIV	GGNNCC	1 cut(s)	39
NspI	RCATGY	1 cut(s)	61
PciI	ACATGT	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	109, 184, 277
PscI	ACATGT	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	108, 183, 276
Sau3AI	GATC	2 cut(s)	3, 315
SetI	ASST	2 cut(s)	82, 187
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	273
Sse9I	AATT	2 cut(s)	144, 295
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	82
TasI	AATT	2 cut(s)	144, 295
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	3 cut(s)	107, 182, 275
TspDTI	ATGAA	1 cut(s)	257
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.