RchiOBHm_Chr5g0063051

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
68798849 .. 68799281
433 bp
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UTR
Exon/CDS
Intron
PRQ33921

Sequence Viewer

Length: 348 bp
ATGTCTTTTATCACTCTTAATCCATTACTTCACACTAAATACGATGCTGCTGTTGGAGATATCACGATCACATCAAACAGATCTCAATATGTTGATTTTACACTGCCATATACCGATTTTGGTTTGGGATTGTTGGTACGAAATGAAAAGAACATGTGGATTTTCTTCAAACCACTTTCCCCATATCTCTGGATTACAAGTGCTGCTTTCTTTGTCCTAACCGGCTGTGTTGTTTGGATAATTGAGGGTCCTACTAACGAAGAATTCCAAGGCACAGCAGAGGAGCAAATTGGAACAGTAATGTGGTTCTCCTTCTCAACTCTTGTGTTTGCTCTTGGTAAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

4.89

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lig_chan-Glu_bd PF10613 8 - 49 4e-08 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 9 - 52 1.8e-07 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 63 - 111 1.1e-07 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029568)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0341711 RchiOBHm_Chr5g0063051

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 138
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 47, 203
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 34, 190
BglII AGATCT 1 cut(s) 80
BisI GCNGC 2 cut(s) 48, 204
BlsI GCNGC 2 cut(s) 49, 205
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 34, 190
BsiSI CCGG 1 cut(s) 222
Bsp143I GATC 2 cut(s) 66, 80
BspLI GGNNCC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 2 cut(s) 66, 80
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 298
BstKTI GATC 2 cut(s) 69, 83
BstMBI GATC 2 cut(s) 66, 80
BstNSI RCATGY 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 34, 190
BstX2I RGATCY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 80
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 154
CviJI RGCY 1 cut(s) 225
CviKI_1 RGCY 1 cut(s) 225
CviQI GTAC 1 cut(s) 137
DpnI GATC 2 cut(s) 68, 82
DpnII GATC 2 cut(s) 66, 80
Eco130I CCWWGG 1 cut(s) 268
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 157
FaiI YATR 5 cut(s) 90, 109, 111, 155, 184
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 48, 204
Fsp4HI GCNGC 2 cut(s) 48, 204
GluI GCNGC 2 cut(s) 48, 204
HapII CCGG 1 cut(s) 222
Hin1II CATG 1 cut(s) 157
HpaII CCGG 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 64, 190
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 66, 80
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 175, 235
Lsp1109I GCAGC 2 cut(s) 34, 190
LweI GCATC 1 cut(s) 34
MalI GATC 2 cut(s) 68, 82
MboI GATC 2 cut(s) 66, 80
MboII GAAGA 2 cut(s) 157, 272
MflI RGATCY 1 cut(s) 80
MluCI AATT 3 cut(s) 240, 263, 288
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 2 cut(s) 238, 274
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 222
NdeII GATC 2 cut(s) 66, 80
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 157
PciI ACATGT 1 cut(s) 153
PkrI GCNGC 2 cut(s) 49, 205
PpuMI RGGWCCY 1 cut(s) 248
PscI ACATGT 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 48, 204
Sau3AI GATC 2 cut(s) 66, 80
Sau96I GGNCC 1 cut(s) 248
SfaNI GCATC 1 cut(s) 34
SgeI CNNG 7 cut(s) 76, 166, 202, 210, 234, 281, 335
SinI GGWCC 1 cut(s) 248
Sse9I AATT 3 cut(s) 240, 263, 288
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 298
TasI AATT 3 cut(s) 240, 263, 288
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 108
TseI GCWGC 2 cut(s) 47, 203
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.