Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029609

Physical Location & Seq

Genomic Coordinates Forward (+)

33909695 .. 33911142

Gene Structure 1448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTTGTCACCAGAAAATGGGTTCAGACTCTCATTACCGGATTCCAGCCATGGAATTCTCAACCAGTTCAGCTAAATTGGACCCGGTTCAATTTGTGCAAGAGGGTTAGAGAGGCTAGTGAAAATTATGGCTTTTTTGAAATAGTATATGATAAGATACCTCTGGGGTTAAGAGCAGAGTTCTTCTCAGCGACAAGGCAACTTTTCGGTCTTCCACTTGAGACACAGAAGAAAAGTATCAATCCAAAGCCTTACCATTGTTATTACGGACAGTTCCCCCATGCTCCCTTGTACGAGAGCATTGGCGTTGAAGATGCCTCCAACTATGAATCCCTTACAAGCTTCGCACATATAATGTGGCCTGATGGTCATGACCAGTTCTGTAACATTGTGATTGCCATGACGCTGCTACGAGTACAGAAGTACAGTGCACCTCCATTAGGGGAGTATGTGACTGGGCTCAATGCTCACACTGACAAAGCATTGACCGCAATACTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAATTTGTCTCTGCCTTCTAGTTCCTTTGTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAAAAAGAACGATATTCGTTAGGAGCATTTGGAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTGGTAGATGAAGAACATCCACAACTCTTTAAAGACTTTGACTATATGGATTTTAGTATGTTTGCCTGTCAGCGGAAGCAATGGCCATGGACTCAGCAATGCAAATTTCGGCTTTTGCAGGAATCAGTAGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

289

Amino Acids

33.34

Weight (kDa)

6.08

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	29 - 92	1.3e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	139 - 230	3e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029609)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342051
rosa_wichuraiana	Rw1G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	707
AccB1I	GGYRCC	2 cut(s)	707, 721
AccB7I	CCANNNNNTGG	1 cut(s)	18
AciI	CCGC	2 cut(s)	489, 805
AclWI	GGATC	2 cut(s)	557, 590
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	3 cut(s)	55, 524, 836
AfaI	GTAC	4 cut(s)	293, 417, 425, 709
AfiI	CCNNNNNNNGG	4 cut(s)	18, 440, 704, 804
AgsI	TTSAA	5 cut(s)	91, 140, 311, 524, 530
AluBI	AGCT	3 cut(s)	73, 342, 863
AluI	AGCT	3 cut(s)	73, 342, 863
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	215, 564
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	557, 590
AlwNI	CAGNNNCTG	1 cut(s)	863
AoxI	GGCC	2 cut(s)	359, 815
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	3 cut(s)	55, 524, 836
Asp700I	GAANNNNTTC	1 cut(s)	628
Asp718I	GGTACC	1 cut(s)	707
AspS9I	GGNCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	817
BanI	GGYRCC	2 cut(s)	707, 721
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	2 cut(s)	359, 719
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	215, 564
BfaI	CTAG	3 cut(s)	117, 570, 868
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	3 cut(s)	83, 709, 723
BmrFI	CCNGG	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	304, 649
BmuI	ACTGGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	50, 818
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 440, 704, 804
Bse1I	ACTGG	4 cut(s)	65, 376, 460, 698
Bse3DI	GCAATG	2 cut(s)	818, 836
BseDI	CCNNGG	2 cut(s)	50, 818
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	4 cut(s)	18, 440, 704, 804
BseMI	GCAATG	2 cut(s)	818, 836
BseMII	CTCAG	2 cut(s)	201, 839
BseNI	ACTGG	4 cut(s)	65, 376, 460, 698
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	393
BshFI	GGCC	2 cut(s)	361, 817
BshNI	GGYRCC	2 cut(s)	707, 721
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	39, 85
BslI	CCNNNNNNNGG	4 cut(s)	18, 440, 704, 804
BsmAI	GTCTC	2 cut(s)	215, 564
BsmI	GAATGC	2 cut(s)	628, 630
BsnI	GGCC	2 cut(s)	361, 817
Bsp1286I	GDGCHC	2 cut(s)	433, 462
Bsp143I	GATC	3 cut(s)	505, 549, 595
Bsp19I	CCATGG	2 cut(s)	50, 818
BspACI	CCGC	2 cut(s)	489, 805
BspANI	GGCC	2 cut(s)	361, 817
BspCNI	CTCAG	2 cut(s)	200, 838
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	3 cut(s)	83, 709, 723
BspPI	GGATC	2 cut(s)	557, 590
BspT107I	GGYRCC	2 cut(s)	707, 721
BsrDI	GCAATG	2 cut(s)	818, 836
BsrI	ACTGG	4 cut(s)	65, 376, 460, 698
BssECI	CCNNGG	2 cut(s)	50, 818
BssMI	GATC	3 cut(s)	505, 549, 595
BssT1I	CCWWGG	2 cut(s)	50, 818
Bst4CI	ACNGT	2 cut(s)	273, 428
BstDEI	CTNAG	2 cut(s)	187, 825
BstDSI	CCRYGG	2 cut(s)	50, 818
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	3 cut(s)	508, 552, 598
BstMAI	GTCTC	2 cut(s)	215, 564
BstMBI	GATC	3 cut(s)	505, 549, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	361, 817
BtgI	CCRYGG	2 cut(s)	50, 818
BtsCI	GGATG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	433, 471
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	81
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	4 cut(s)	292, 416, 424, 708
CviAII	CATG	6 cut(s)	51, 281, 371, 400, 609, 819
CviQI	GTAC	4 cut(s)	292, 416, 424, 708
DdeI	CTNAG	2 cut(s)	187, 825
DpnI	GATC	3 cut(s)	507, 551, 597
DpnII	GATC	3 cut(s)	505, 549, 595
DraI	TTTAAA	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	815
Eco130I	CCWWGG	2 cut(s)	50, 818
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	50, 818
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	50, 818
FaeI	CATG	6 cut(s)	54, 284, 374, 403, 612, 822
FatI	CATG	6 cut(s)	50, 280, 370, 399, 608, 818
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	407
FokI	GGATG	1 cut(s)	735
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	407
FspBI	CTAG	3 cut(s)	117, 570, 868
GluI	GCNGC	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	361, 817
HapII	CCGG	2 cut(s)	39, 85
HgaI	GACGC	1 cut(s)	412
Hin1II	CATG	6 cut(s)	54, 284, 374, 403, 612, 822
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	5 cut(s)	28, 42, 329, 823, 854
HpaII	CCGG	2 cut(s)	39, 85
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	1 cut(s)	576
HpyCH4III	ACNGT	2 cut(s)	273, 428
HpyCH4V	TGCA	5 cut(s)	99, 431, 628, 834, 850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	2 cut(s)	187, 825
Hsp92II	CATG	6 cut(s)	54, 284, 374, 403, 612, 822
KpnI	GGTACC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	505, 549, 595
LmnI	GCTCC	2 cut(s)	289, 683
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	2 cut(s)	304, 649
MaeI	CTAG	3 cut(s)	117, 570, 868
MaeIII	GTNAC	3 cut(s)	7, 383, 451
MalI	GATC	3 cut(s)	507, 551, 597
MboI	GATC	3 cut(s)	505, 549, 595
MboII	GAAGA	6 cut(s)	175, 203, 241, 323, 633, 755
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	433, 462
MlsI	TGGCCA	1 cut(s)	817
MluCI	AATT	7 cut(s)	55, 76, 91, 124, 524, 553, 836
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	2 cut(s)	22, 817
MmeI	TCCRAC	2 cut(s)	345, 571
MnlI	CCTC	7 cut(s)	96, 106, 171, 328, 444, 609, 697
Mox20I	TGGCCA	1 cut(s)	817
Mph1103I	ATGCAT	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	628
MscI	TGGCCA	1 cut(s)	817
MseI	TTAA	2 cut(s)	170, 762
Msp20I	TGGCCA	1 cut(s)	817
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	2 cut(s)	39, 85
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	2 cut(s)	628, 630
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	85
NcoI	CCATGG	2 cut(s)	50, 818
NdeII	GATC	3 cut(s)	505, 549, 595
NlaIII	CATG	6 cut(s)	54, 284, 374, 403, 612, 822
NlaIV	GGNNCC	3 cut(s)	83, 709, 723
NmuCI	GTSAC	2 cut(s)	7, 451
NsiI	ATGCAT	1 cut(s)	630
PagI	TCATGA	1 cut(s)	370
PctI	GAATGC	2 cut(s)	628, 630
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	3 cut(s)	42, 329, 854
PflMI	CCANNNNNTGG	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	408
PleI	GAGTC	2 cut(s)	22, 817
PpsI	GAGTC	2 cut(s)	22, 817
PspN4I	GGNNCC	3 cut(s)	83, 709, 723
PspPI	GGNCC	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	4 cut(s)	293, 417, 425, 709
RsaNI	GTAC	4 cut(s)	292, 416, 424, 708
SaqAI	TTAA	2 cut(s)	170, 762
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	3 cut(s)	505, 549, 595
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	2 cut(s)	22, 817
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	433, 462
SetI	ASST	5 cut(s)	75, 163, 344, 436, 865
SfaNI	GCATC	2 cut(s)	304, 649
SinI	GGWCC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	7 cut(s)	55, 76, 91, 124, 524, 553, 836
SsiI	CCGC	2 cut(s)	489, 805
SspMI	CTAG	3 cut(s)	117, 570, 868
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	50, 818
TaaI	ACNGT	2 cut(s)	273, 428
TaqI	TCGA	1 cut(s)	643
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	7 cut(s)	55, 76, 91, 124, 524, 553, 836
TatI	WGTACW	2 cut(s)	415, 423
TfiI	GAWTC	3 cut(s)	42, 329, 854
Tru1I	TTAA	2 cut(s)	170, 762
Tru9I	TTAA	2 cut(s)	170, 762
TscAI	CASTG	2 cut(s)	433, 478
TseFI	GTSAC	2 cut(s)	7, 451
TseI	GCWGC	1 cut(s)	406
Tsp45I	GTSAC	2 cut(s)	7, 451
TspDTI	ATGAA	2 cut(s)	342, 756
TspGWI	ACGGA	2 cut(s)	282, 555
TspRI	CASTG	2 cut(s)	433, 478
Van91I	CCANNNNNTGG	1 cut(s)	18
VneI	GTGCAC	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	3 cut(s)	55, 524, 836
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	3 cut(s)	117, 570, 868
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.