Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0029609

Physical Location & Seq

Genomic Coordinates Reverse (-)

31119622 .. 31120979

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTTCAGACTCTCATTACCGGATTCCAGCCATGGAATTCTCAACCAGTTCAGCTAAATTGGACCCGGTTCAATTTGTGCAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGCTTTTTTGAAATAGTATATGATAAGATACCTCTGGGGTTAAGAGCAGAGTTCTTCTCAGCGACAAGGCAACTTTTCGGTCTTCCACTTGAGACACAGAAGAAAAGTATCAATCCAAAGCCTTACCATTGTTATTACGGACAGTTCCCCCATGCTCCCTTGTACGAGAGCATTGGCGTTGAAGATGCCTCCAACTATGAATCCCTTACAAGCTTCGCACAAATAATGTGGCCTGATGGTCATGACCAGTTCTGTAACATTGTGATTGCCATGGTGAAGAAGCTGGATGAGCTTAAGGAAATGATTGAAATGATGATTCTTGATAGCTATGTACAGAAGTACAGTGCACCTCCATTAGGGGAGTATGTGACTGGGCTCAATGCTCACACTGACAAAGCATTGACCGCAATACTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAAGTTGTCTCTGCCTTCTAGTTCCTTTGTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAAAAAGAACGATATTCGTTAGGAGCATTTGGAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTGGTAGATGAAGAACATCCACAACTCTTTAAAGACTTTGACTATATGGATTTTAGTATGTTTGGCCTTTCAGCGGAAGCAATGGCCATGGACTCAGCAATGCAAATTTCGGCTTTTGCAGGAATCAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

297

Amino Acids

33.66

Weight (kDa)

5.05

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	23 - 86	5.7e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	149 - 239	3.7e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029609)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342051
rosa_wichuraiana	Rw1G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	734
AccB1I	GGYRCC	2 cut(s)	734, 748
AciI	CCGC	2 cut(s)	516, 833
AclWI	GGATC	2 cut(s)	584, 617
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	3 cut(s)	37, 551, 864
AfaI	GTAC	4 cut(s)	275, 444, 452, 736
AfiI	CCNNNNNNNGG	3 cut(s)	467, 731, 832
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	73, 122, 293, 419, 551, 557
AluBI	AGCT	6 cut(s)	55, 324, 394, 403, 438, 891
AluI	AGCT	6 cut(s)	55, 324, 394, 403, 438, 891
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	197, 591
Alw44I	GTGCAC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	584, 617
AlwNI	CAGNNNCTG	1 cut(s)	891
AoxI	GGCC	3 cut(s)	341, 823, 843
ApaLI	GTGCAC	1 cut(s)	456
ApoI	RAATTY	3 cut(s)	37, 551, 864
Asp700I	GAANNNNTTC	1 cut(s)	655
Asp718I	GGTACC	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	2 cut(s)	734, 748
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	460
BccI	CCATC	2 cut(s)	341, 746
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	197, 591
BfaI	CTAG	1 cut(s)	597
BfrI	CTTAAG	1 cut(s)	404
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	65, 736, 750
BmrFI	CCNGG	1 cut(s)	67
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	286, 676
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	32, 381, 846
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 731, 832
Bse1I	ACTGG	4 cut(s)	47, 358, 487, 725
Bse3DI	GCAATG	2 cut(s)	846, 864
BseDI	CCNNGG	3 cut(s)	32, 381, 846
BseGI	GGATG	2 cut(s)	403, 775
BseLI	CCNNNNNNNGG	3 cut(s)	467, 731, 832
BseMI	GCAATG	2 cut(s)	846, 864
BseMII	CTCAG	2 cut(s)	183, 867
BseNI	ACTGG	4 cut(s)	47, 358, 487, 725
BseSI	GKGCMC	1 cut(s)	460
BshFI	GGCC	3 cut(s)	343, 825, 845
BshNI	GGYRCC	2 cut(s)	734, 748
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	21, 67
BslI	CCNNNNNNNGG	3 cut(s)	467, 731, 832
BsmAI	GTCTC	2 cut(s)	197, 591
BsmI	GAATGC	2 cut(s)	655, 657
BsnI	GGCC	3 cut(s)	343, 825, 845
Bsp1286I	GDGCHC	2 cut(s)	460, 489
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	532, 576, 622
Bsp19I	CCATGG	3 cut(s)	32, 381, 846
BspACI	CCGC	2 cut(s)	516, 833
BspANI	GGCC	3 cut(s)	343, 825, 845
BspCNI	CTCAG	2 cut(s)	182, 866
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	65, 736, 750
BspPI	GGATC	2 cut(s)	584, 617
BspT107I	GGYRCC	2 cut(s)	734, 748
BspTI	CTTAAG	1 cut(s)	404
BsrDI	GCAATG	2 cut(s)	846, 864
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	4 cut(s)	47, 358, 487, 725
BssECI	CCNNGG	3 cut(s)	32, 381, 846
BssMI	GATC	3 cut(s)	532, 576, 622
BssT1I	CCWWGG	3 cut(s)	32, 381, 846
Bst4CI	ACNGT	2 cut(s)	255, 455
BstAFI	CTTAAG	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	169, 853
BstDSI	CCRYGG	3 cut(s)	32, 381, 846
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	403, 775
BstKTI	GATC	3 cut(s)	535, 579, 625
BstMAI	GTCTC	2 cut(s)	197, 591
BstMBI	GATC	3 cut(s)	532, 576, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 515
BstSCI	CCNGG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	3 cut(s)	343, 825, 845
BtgI	CCRYGG	3 cut(s)	32, 381, 846
BtsCI	GGATG	2 cut(s)	403, 775
BtsIMutI	CAGTG	2 cut(s)	460, 498
CaiI	CAGNNNCTG	1 cut(s)	891
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	4 cut(s)	274, 443, 451, 735
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	6 cut(s)	33, 263, 353, 382, 636, 847
CviQI	GTAC	4 cut(s)	274, 443, 451, 735
DdeI	CTNAG	2 cut(s)	169, 853
DpnI	GATC	3 cut(s)	534, 578, 624
DpnII	GATC	3 cut(s)	532, 576, 622
DraI	TTTAAA	1 cut(s)	790
EaeI	YGGCCR	1 cut(s)	843
Eco130I	CCWWGG	3 cut(s)	32, 381, 846
Eco24I	GRGCYC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	63
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	32, 381, 846
EcoT22I	ATGCAT	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	3 cut(s)	32, 381, 846
FaeI	CATG	6 cut(s)	36, 266, 356, 385, 639, 850
FatI	CATG	6 cut(s)	32, 262, 352, 381, 635, 846
FbaI	TGATCA	1 cut(s)	532
FokI	GGATG	2 cut(s)	410, 762
FriOI	GRGCYC	1 cut(s)	489
FspBI	CTAG	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	343, 825, 845
HapII	CCGG	2 cut(s)	21, 67
Hin1II	CATG	6 cut(s)	36, 266, 356, 385, 639, 850
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	6 cut(s)	10, 24, 311, 427, 851, 882
HpaII	CCGG	2 cut(s)	21, 67
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	353, 431
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	2 cut(s)	255, 455
HpyCH4V	TGCA	5 cut(s)	81, 458, 655, 862, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 515
HpyF3I	CTNAG	2 cut(s)	169, 853
Hsp92II	CATG	6 cut(s)	36, 266, 356, 385, 639, 850
KpnI	GGTACC	1 cut(s)	738
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	532, 576, 622
LmnI	GCTCC	2 cut(s)	271, 710
LweI	GCATC	2 cut(s)	286, 676
MaeI	CTAG	1 cut(s)	597
MaeIII	GTNAC	2 cut(s)	365, 478
MalI	GATC	3 cut(s)	534, 578, 624
MboI	GATC	3 cut(s)	532, 576, 622
MboII	GAAGA	7 cut(s)	157, 185, 223, 305, 400, 660, 782
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	460, 489
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	6 cut(s)	37, 58, 73, 106, 551, 864
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	2 cut(s)	4, 845
MmeI	TCCRAC	2 cut(s)	327, 598
MnlI	CCTC	7 cut(s)	78, 88, 153, 310, 471, 636, 724
Mox20I	TGGCCA	1 cut(s)	845
Mph1103I	ATGCAT	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	3 cut(s)	152, 405, 789
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	833
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	21, 67
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	2 cut(s)	655, 657
MwoI	GCNNNNNNNGC	2 cut(s)	400, 515
NciI	CCSGG	1 cut(s)	67
NcoI	CCATGG	3 cut(s)	32, 381, 846
NdeII	GATC	3 cut(s)	532, 576, 622
NlaIII	CATG	6 cut(s)	36, 266, 356, 385, 639, 850
NlaIV	GGNNCC	3 cut(s)	65, 736, 750
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	657
PagI	TCATGA	1 cut(s)	352
PctI	GAATGC	2 cut(s)	655, 657
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	4 cut(s)	24, 311, 427, 882
PleI	GAGTC	2 cut(s)	4, 845
PpsI	GAGTC	2 cut(s)	4, 845
PspN4I	GGNNCC	3 cut(s)	65, 736, 750
PspPI	GGNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	891
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	4 cut(s)	275, 444, 452, 736
RsaNI	GTAC	4 cut(s)	274, 443, 451, 735
SaqAI	TTAA	3 cut(s)	152, 405, 789
Sau3AI	GATC	3 cut(s)	532, 576, 622
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	4, 845
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	460, 489
SetI	ASST	8 cut(s)	57, 145, 326, 396, 405, 440, 463, 893
SfaNI	GCATC	2 cut(s)	286, 676
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	200, 404
SmoI	CTYRAG	2 cut(s)	200, 404
Sse9I	AATT	6 cut(s)	37, 58, 73, 106, 551, 864
SsiI	CCGC	2 cut(s)	516, 833
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	3 cut(s)	32, 381, 846
TaaI	ACNGT	2 cut(s)	255, 455
TaqI	TCGA	1 cut(s)	670
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	6 cut(s)	37, 58, 73, 106, 551, 864
TatI	WGTACW	2 cut(s)	442, 450
TfiI	GAWTC	4 cut(s)	24, 311, 427, 882
Tru1I	TTAA	3 cut(s)	152, 405, 789
Tru9I	TTAA	3 cut(s)	152, 405, 789
TscAI	CASTG	2 cut(s)	460, 505
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	324, 783
TspGWI	ACGGA	2 cut(s)	264, 582
TspRI	CASTG	2 cut(s)	460, 505
Vha464I	CTTAAG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	3 cut(s)	37, 551, 864
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	1 cut(s)	597
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.