Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024748

Physical Location & Seq

Genomic Coordinates Reverse (-)

37493437 .. 37494047

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAACGATCTTTTAAGAAATGGGGATAATGTTGGGTATATAAATACTTTTGATATGTTCGATGATGTCTTGAAAGAAGTAGGTTTTCGTGATCATAATCTTAAGAGTTTCAAAATTATGGATGCTATGGAGGGAGACAAAATTAACGAGGCTCTCTCAAAAGGGAGTGCAAAAGGTGGTATTTCTGCTGTTATTCATGAAGCCCCCTATGCGAAGCTCTTTGTTGCAAAATATTGTTCGAAATACACCATGATTGGACCCATCTTTAAAGCTGATGGCTTTGGCTTTGTTTTTCCAAAGGGTTCATCTATTGTACGCGACGTCTCACAGGTTGTTCTAAAGGTGACTGCAGGACAGAAGATACTGAATATTGAAAGGAAATGGTTCAAGAAAGATGAACACAACTGTCAAGACTCGAGTAGCCCAAAAATTTCTAGCAGTGAACTTCGACTTGAAAGCTTTTGGGTCCGATTTCTCATTGCTGGGATGGCTTCGATACTTGCTCTATTTCTTTTTGTATCTTCCTTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

177

Amino Acids

19.79

Weight (kDa)

8.8

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024748)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345101
rosa_laevigata	RLG00000028852
rosa_multiflora	Rmu_co8132686.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccII	CGCG	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	315
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	73, 112, 374, 388, 455
AluBI	AGCT	3 cut(s)	217, 272, 459
AluI	AGCT	3 cut(s)	217, 272, 459
Alw26I	GTCTC	2 cut(s)	129, 328
Ama87I	CYCGRG	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	257, 466
AsuHPI	GGTGA	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	257, 466
BccI	CCATC	3 cut(s)	269, 269, 481
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	129, 328
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	257, 466
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	257, 466
BmiI	GGNNCC	2 cut(s)	259, 467
BmsI	GCATC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu14I	TTCGAA	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	96
BseGI	GGATG	2 cut(s)	127, 492
BseJI	GATNNNNATC	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	477
BseYI	CCCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	129, 328
BsmBI	CGTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	7, 91
BspFNI	CGCG	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	259, 467
BspMAI	CTGCAG	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	477
BssMI	GATC	2 cut(s)	7, 91
BssNI	GRCGYC	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	321
BstAFI	CTTAAG	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	127, 492
BstFNI	CGCG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	10, 94
BstMAI	GTCTC	2 cut(s)	129, 328
BstMBI	GATC	2 cut(s)	7, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 488
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	127, 492
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	445
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	257, 466
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	2 cut(s)	197, 250
CviJI	RGCY	9 cut(s)	152, 203, 217, 272, 279, 285, 423, 459, 491
CviKI_1	RGCY	9 cut(s)	152, 203, 217, 272, 279, 285, 423, 459, 491
CviQI	GTAC	1 cut(s)	314
DpnI	GATC	2 cut(s)	9, 93
DpnII	GATC	2 cut(s)	7, 91
DraI	TTTAAA	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	257, 466
Eco88I	CYCGRG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	2 cut(s)	200, 253
FaiI	YATR	9 cut(s)	39, 41, 56, 96, 119, 128, 198, 210, 251
FatI	CATG	2 cut(s)	196, 249
FbaI	TGATCA	1 cut(s)	91
FokI	GGATG	2 cut(s)	134, 499
FspBI	CTAG	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	486
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	200, 253
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	5 cut(s)	70, 89, 197, 388, 410
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	170, 227, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 488
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	200, 253
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	7, 91
LpnPI	CCDG	3 cut(s)	314, 336, 468
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	9, 93
MboI	GATC	2 cut(s)	7, 91
MboII	GAAGA	2 cut(s)	370, 513
MluCI	AATT	3 cut(s)	114, 141, 429
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	2 cut(s)	124, 142
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	4 cut(s)	14, 102, 144, 267
MspCI	CTTAAG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	209, 488
NdeII	GATC	2 cut(s)	7, 91
NlaIII	CATG	2 cut(s)	200, 253
NlaIV	GGNNCC	2 cut(s)	259, 467
NmuCI	GTSAC	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	415
PagI	TCATGA	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	482
PspN4I	GGNNCC	2 cut(s)	259, 467
PspPI	GGNCC	2 cut(s)	257, 466
PspXI	VCTCGAGB	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	14, 102, 144, 267
Sau3AI	GATC	2 cut(s)	7, 91
Sau96I	GGNCC	2 cut(s)	257, 466
SchI	GAGTC	1 cut(s)	407
SetI	ASST	8 cut(s)	85, 178, 219, 274, 324, 333, 345, 461
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	415
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	2 cut(s)	257, 466
SlaI	CTCGAG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	101, 415
SmoI	CTYRAG	2 cut(s)	101, 415
Sse9I	AATT	3 cut(s)	114, 141, 429
SspI	AATATT	2 cut(s)	233, 370
SspMI	CTAG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	5 cut(s)	60, 239, 416, 448, 494
TasI	AATT	3 cut(s)	114, 141, 429
Tru1I	TTAA	4 cut(s)	14, 102, 144, 267
Tru9I	TTAA	4 cut(s)	14, 102, 144, 267
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	5 cut(s)	17, 185, 213, 294, 411
TspRI	CASTG	1 cut(s)	445
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	257, 466
XapI	RAATTY	1 cut(s)	429
XhoI	CTCGAG	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	435
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.