Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8132686.1

Orthogroup ID

OG0024748

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 593

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8132686.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

atgactatatggatatttgttgtgctagtattgacgataaattacacggccatcctaacgtcaatctatacagtccaacaactccagccaacagttacagatttaaaggatctattaagcaagggggacaacgtcggctgcaagccaaatgcttacacttgcaacatcttgaaacaatttggttttaatgatgccaatcttaaggtatttagtactatggaagaacttgatgaagcactttcgaaagggactgcaaaaggtggtattgctgctgctattgatgaaaccccatatatgaagcttttccttgcaaagtattgcaacaaatataccatgattggacccatatttaaaactgatggttttgcctttgtctttccaaaacgttcccctcttctgcctgatgtttcacaggcaatcctgaatgtgactggaggagagaagataatgaacatcgaacatgaatggttcaagaaagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

160

Amino Acids

17.89

Weight (kDa)

6.58

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024748)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345101
rosa_laevigata	RLG00000028852
rosa_multiflora	Rmu_co8132686.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	385
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	172, 472
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	138, 269, 272
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	125, 256, 259
BccI	CCATC	2 cut(s)	59, 353
BceAI	ACGGC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	3 cut(s)	139, 270, 273
BlsI	GCNGC	3 cut(s)	140, 271, 274
BmcAI	AGTACT	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	343
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	68, 453
Bpu14I	TTCGAA	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	436
Bse8I	GATNNNNATC	1 cut(s)	195
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	125, 256, 259
BshFI	GGCC	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	140, 262
BsmFI	GGGAC	2 cut(s)	140, 262
BsnI	GGCC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	436
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	73, 94
Bst6I	CTCTTC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	125, 256, 259
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	334, 461
CviJI	RGCY	5 cut(s)	50, 88, 138, 145, 301
CviKI_1	RGCY	5 cut(s)	50, 88, 138, 145, 301
CviQI	GTAC	1 cut(s)	213
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraI	TTTAAA	2 cut(s)	105, 352
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	341
FaeI	CATG	2 cut(s)	337, 464
FaqI	GGGAC	2 cut(s)	140, 262
FatI	CATG	2 cut(s)	333, 460
Fnu4HI	GCNGC	3 cut(s)	139, 270, 273
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	139, 270, 273
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	3 cut(s)	139, 270, 273
GsuI	CTGGAG	2 cut(s)	68, 453
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	337, 464
HindIII	AAGCTT	1 cut(s)	299
Hpy188III	TCNNGA	3 cut(s)	169, 421, 472
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	73, 94
HpyCH4IV	ACGT	3 cut(s)	59, 132, 385
HpyCH4V	TGCA	5 cut(s)	141, 162, 254, 311, 321
HpySE526I	ACGT	3 cut(s)	59, 132, 385
Hsp92II	CATG	2 cut(s)	337, 464
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	98, 398, 414, 417, 434
Lsp1109I	GCAGC	3 cut(s)	125, 256, 259
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	59, 132, 385
MaeIII	GTNAC	2 cut(s)	94, 427
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	233, 386, 454
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	2 cut(s)	40, 176
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	402, 428
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	5 cut(s)	104, 116, 186, 201, 351
MspCI	CTTAAG	1 cut(s)	200
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	337, 464
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	140, 271, 274
Psp1406I	AACGTT	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	109
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	5 cut(s)	104, 116, 186, 201, 351
SatI	GCNGC	3 cut(s)	139, 270, 273
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	341
ScaI	AGTACT	1 cut(s)	214
SetI	ASST	6 cut(s)	62, 135, 207, 262, 303, 388
SfaNI	GCATC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	40, 176
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	73, 94
TaiI	ACGT	3 cut(s)	62, 135, 388
TaqI	TCGA	2 cut(s)	242, 456
TasI	AATT	2 cut(s)	40, 176
TatI	WGTACW	1 cut(s)	212
Tru1I	TTAA	5 cut(s)	104, 116, 186, 201, 351
Tru9I	TTAA	5 cut(s)	104, 116, 186, 201, 351
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	138, 269, 272
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	246, 297, 311, 464, 477
Tth111I	GACNNNGTC	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.