RchiOBHm_Chr1g0346801

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024774
Physical Location & Seq
Reverse (-)
39336927 .. 39337790
864 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57302

Sequence Viewer

Length: 864 bp
ATGGAGAAGCATAAAAAACCATACTCAGACAATTTCAGAAAACGTTATTGGGAAGGAATTCGAAACGGATGTAAACTATCAGAGAAAGGAAAGGGGCGTAAACTATCAGAGAAAGATAAAGATGATAGCCTAAGAACACTCCTCAAGGTTTCTGAACAAAGCATCATTGATTGTTATGCTGGGTTTGATCTTGACGTTGACCGCAAAAAAGTTGTGGAAATAATTCAAGTTGATGCCTTCTTTATAATTGAGCTCTTTATGAGGAACTGCGAAGTAGAATATCATGATAAGGATTACATATTAAGTTCACCATGGCTGAGGAAAGCTATAGAGCTGGAATTGATACTAATTGAAAATCAGCTTCCTTTTTCTCTTCTTCAAGACATATATATCAAGATGTCCCAAGCCTTTTCCAGTTCTCTTCGCCAAGAACAAGCACAAGCACACAAAGATGAAACTGTTATAGATATTGATGAAAAAGGTAATGAATTTTTGGAGCTTACCTGTAAGTTTTTTGAAGATTTCGGCTGGGTGATCAAGGATGCAGTACCAGAACCAAAACACTTCACTGATTTGGTAAGACATTTTATGCTTCCACATGTAGAGGAAAAAGTGACATGGGAAGCTACCACCAAAAATAGATACAGTATAACAATGCTGACAGCGGCTCGGGTGAACTTTATGCGAGCAGGTGATGAAGATGATAAACGTCTTGTCATAAAGATTGATGATCCTCAAGCTTCTGATGAATGTGTTACTGAAAAAAAACCCTCTAAGCATAAGTTAAACTTGGCATGTTTCCAAAGTATGAACTTGAAGCTTACTCTATTTCGTGTAAAGGATGACACAGAATGCATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

287

Amino Acids

33.7

Weight (kDa)

5.76

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 286 1.5e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024774)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0346801
rosa_samantha Rh1BG167800 Rh1DG198600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AarI CACCTGC 1 cut(s) 680
Acc36I ACCTGC 1 cut(s) 680
AciI CCGC 2 cut(s) 202, 665
AclI AACGTT 1 cut(s) 43
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 57, 488
AfaI GTAC 1 cut(s) 549
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 5 cut(s) 227, 353, 380, 518, 817
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 8 cut(s) 253, 326, 334, 361, 499, 626, 740, 820
AluI AGCT 8 cut(s) 253, 326, 334, 361, 499, 626, 740, 820
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 669
ApoI RAATTY 2 cut(s) 57, 488
Asp700I GAANNNNTTC 2 cut(s) 57, 222
AsuHPI GGTGA 4 cut(s) 300, 544, 685, 704
AsuII TTCGAA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 669
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 317
BclI TGATCA 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 680
BisI GCNGC 1 cut(s) 666
BlsI GCNGC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 669
BmsI GCATC 3 cut(s) 171, 223, 532
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 61
BpuEI CTTGAG 2 cut(s) 128, 720
BsaJI CCNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 3 cut(s) 74, 547, 847
BseMII CTCAG 2 cut(s) 39, 308
BseNI ACTGG 1 cut(s) 414
BseRI GAGGAG 1 cut(s) 131
BseYI CCCAGC 2 cut(s) 179, 528
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 669
BslFI GGGAC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 857
BsoBI CYCGRG 1 cut(s) 669
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 187, 534, 730
Bsp19I CCATGG 1 cut(s) 311
BspACI CCGC 2 cut(s) 202, 665
BspCNI CTCAG 2 cut(s) 38, 309
BspHI TCATGA 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 61
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 3 cut(s) 187, 534, 730
BssT1I CCWWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 460, 647
Bst6I CTCTTC 2 cut(s) 378, 426
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 4 cut(s) 25, 131, 317, 774
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 3 cut(s) 74, 547, 847
BstKTI GATC 3 cut(s) 190, 537, 733
BstMBI GATC 3 cut(s) 187, 534, 730
BstNSI RCATGY 2 cut(s) 602, 798
BstSFI CTRYAG 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 3 cut(s) 74, 547, 847
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 1 cut(s) 687
CciI TCATGA 1 cut(s) 283
Csp6I GTAC 1 cut(s) 548
CviAII CATG 5 cut(s) 284, 312, 599, 618, 795
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 4 cut(s) 25, 131, 317, 774
DpnI GATC 3 cut(s) 189, 536, 732
DpnII GATC 3 cut(s) 187, 534, 730
Eam1104I CTCTTC 2 cut(s) 378, 426
EarI CTCTTC 2 cut(s) 378, 426
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 669
EcoICRI GAGCTC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 5 cut(s) 287, 315, 602, 621, 798
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 1 cut(s) 385
FatI CATG 5 cut(s) 283, 311, 598, 617, 794
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 666
FokI GGATG 3 cut(s) 81, 554, 854
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 666
GluI GCNGC 1 cut(s) 666
GsaI CCCAGC 2 cut(s) 183, 532
Hin1II CATG 5 cut(s) 287, 315, 602, 621, 798
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 2 cut(s) 738, 818
HphI GGTGA 4 cut(s) 300, 544, 685, 704
Hpy166II GTNNAC 5 cut(s) 74, 101, 199, 308, 676
Hpy188I TCNGA 6 cut(s) 28, 38, 82, 109, 154, 745
Hpy188III TCNNGA 4 cut(s) 191, 284, 380, 394
Hpy8I GTNNAC 5 cut(s) 74, 101, 199, 308, 676
HpyAV CCTTC 2 cut(s) 47, 247
HpyCH4III ACNGT 2 cut(s) 460, 647
HpyCH4IV ACGT 3 cut(s) 43, 195, 709
HpyCH4V TGCA 2 cut(s) 545, 855
HpyF3I CTNAG 4 cut(s) 25, 131, 317, 774
HpySE526I ACGT 3 cut(s) 43, 195, 709
Hsp92II CATG 5 cut(s) 287, 315, 602, 621, 798
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 187, 534, 730
LmnI GCTCC 1 cut(s) 496
LpnPI CCDG 7 cut(s) 165, 320, 427, 514, 517, 564, 675
LweI GCATC 3 cut(s) 171, 223, 532
MaeII ACGT 3 cut(s) 43, 195, 709
MaeIII GTNAC 2 cut(s) 613, 754
MalI GATC 3 cut(s) 189, 536, 732
MboI GATC 3 cut(s) 187, 534, 730
MboII GAAGA 5 cut(s) 365, 368, 413, 530, 710
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 7 cut(s) 31, 57, 222, 246, 338, 348, 488
MnlI CCTC 6 cut(s) 152, 255, 312, 598, 744, 781
Mph1103I ATGCAT 1 cut(s) 857
MroXI GAANNNNTTC 2 cut(s) 57, 222
MseI TTAA 2 cut(s) 302, 785
MslI CAYNNNNRTG 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 857
NcoI CCATGG 1 cut(s) 311
NdeII GATC 3 cut(s) 187, 534, 730
NlaIII CATG 5 cut(s) 287, 315, 602, 621, 798
NmuCI GTSAC 1 cut(s) 613
NsiI ATGCAT 1 cut(s) 857
NspI RCATGY 2 cut(s) 602, 798
NspV TTCGAA 1 cut(s) 61
PagI TCATGA 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 680
PciI ACATGT 1 cut(s) 598
PctI GAATGC 1 cut(s) 857
PdmI GAANNNNTTC 2 cut(s) 57, 222
PkrI GCNGC 1 cut(s) 667
PscI ACATGT 1 cut(s) 598
PsiI TTATAA 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 43
PspFI CCCAGC 2 cut(s) 179, 528
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 450
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 302, 785
SatI GCNGC 1 cut(s) 666
Sau3AI GATC 3 cut(s) 187, 534, 730
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 3 cut(s) 171, 223, 532
SfcI CTRYAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 143, 735
SmoI CTYRAG 2 cut(s) 143, 735
Sse9I AATT 7 cut(s) 31, 57, 222, 246, 338, 348, 488
SsiI CCGC 2 cut(s) 202, 665
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 460, 647
TaiI ACGT 3 cut(s) 46, 198, 712
TaqI TCGA 1 cut(s) 61
TasI AATT 7 cut(s) 31, 57, 222, 246, 338, 348, 488
TauI GCSGC 1 cut(s) 668
Tru1I TTAA 2 cut(s) 302, 785
Tru9I TTAA 2 cut(s) 302, 785
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 6 cut(s) 468, 489, 501, 711, 762, 824
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 1 cut(s) 574
XapI RAATTY 2 cut(s) 57, 488
XceI RCATGY 2 cut(s) 602, 798
XmnI GAANNNNTTC 2 cut(s) 57, 222
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.