Rh1BG167800

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0024774
Physical Location & Seq
Reverse (-)
26867117 .. 26876396
9280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG167800.1

Sequence Viewer

Length: 1092 bp
ATGGACGCCAGCCGAGCATCGTCAAACATCGTCAGCTATTCAATGGTGGCTGCGGAACCAATCTCCCCATCTTCAACCTCGCGAGTAACCCGGAGTCATTCTTTAAAATCCCTGTTGTTCTTCATCAACAATACGAATGAGATTAAAGCATTACGGTCAAAATCAACGTCAGATCAGAAAATTGAGCTTAACATCATACGCAAGTGGGGTATTTATAGGGTTCCCAGCAAACTCCGCAATGTGAATGCAGCAGCATACACTCCTCAGTTACTTTCCATTGGCCTATTCCACTATGGCAAACCAGAACTCAAGGACATGGAGAAGCATAAAAAAACATACTCCGACAATTTCAGAAAACGTTATTGGGAAGGAATTCGAAACGGATGTAAACTATCAGAGAAAGGAAAGGGGCGTAAACTATCAGAGAAAGATAAAGATGATAGCCTAAGAACACTCCTCAAGGTTTCTGAACAAAGCATCATTGATTGTTATGCTCAGTTTGATCTTGACGTTGACCGCAAAAAAGTTGTGGAAATAATTCAAGTTGATGCCTTCTTTATAATTGAGCTCTTTATGAGGAACTGCGAAGTAGAATATCATGATAAGGATTACATATTAAGTTCACCATGGCTGAGGAAAGCTATAGAGCTGGAATTGATACTAATTGAAAATCAGCTTCCTTTTTCTCTTCTTCAAGACATATATATCAAGATGTCCCAAGCCTTTTCCAGTTCTCTTCGCCAAGAACAAGCACAAGCACACAAAGATGAAACTGTTATAGTTATTGATGAAAAAGGTAATGAATTTTTGGAGCTTACCTGTAAGTTTTTTGAAGATTTCGGCCGGGTGATCAAGGATGCAGTACCAGAACCAAAACACTTCACTGATTTGGTAAGACATTTTATGCTTCCACATGTAGAGGAAAAAGTGACATGGGAAGCTACCACCAAAAATAGATACAGTATAACAATGCTGACAGCGGCTCGGGTGAACTTTATGCGAGCAGGTGATGAAGATGATAAACGTCTTGTCATAAAGATTGATGATCCTCAAGCTTCTGATGAATGTGTTACTGAAAAAAAAACCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

363

Amino Acids

42.07

Weight (kDa)

8.1

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 71 - 348 9.4e-41 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024774)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0346801
rosa_samantha Rh1BG167800 Rh1DG198600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AarI CACCTGC 1 cut(s) 995
Acc36I ACCTGC 1 cut(s) 995
AccII CGCG 1 cut(s) 82
AciI CCGC 4 cut(s) 53, 235, 517, 980
AclI AACGTT 1 cut(s) 358
AclWI GGATC 1 cut(s) 1040
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 2 cut(s) 372, 803
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 864
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 6 cut(s) 42, 75, 542, 668, 695, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 346, 378
AluBI AGCT 9 cut(s) 36, 187, 568, 641, 649, 676, 814, 941, 1055
AluI AGCT 9 cut(s) 36, 187, 568, 641, 649, 676, 814, 941, 1055
Alw21I GWGCWC 1 cut(s) 570
AlwI GGATC 1 cut(s) 1040
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 2 cut(s) 280, 841
ApeKI GCWGC 3 cut(s) 50, 248, 251
ApoI RAATTY 2 cut(s) 372, 803
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp700I GAANNNNTTC 2 cut(s) 372, 537
AsuC2I CCSGG 2 cut(s) 91, 845
AsuHPI GGTGA 4 cut(s) 615, 859, 1000, 1019
AsuII TTCGAA 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 984
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 632
BbvI GCAGC 3 cut(s) 37, 260, 263
BccI CCATC 1 cut(s) 76
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 2 cut(s) 91, 845
BfmI CTRYAG 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 995
BisI GCNGC 4 cut(s) 51, 249, 252, 981
BlsI GCNGC 4 cut(s) 52, 250, 253, 982
Bme1390I CCNGG 2 cut(s) 91, 845
BmeT110I CYCGRG 1 cut(s) 984
BmiI GGNNCC 2 cut(s) 57, 222
BmrFI CCNGG 2 cut(s) 91, 845
BmsI GCATC 4 cut(s) 26, 486, 538, 847
Bpu10I CCTNAGC 1 cut(s) 632
Bpu14I TTCGAA 1 cut(s) 376
BpuEI CTTGAG 3 cut(s) 293, 443, 1035
BpuMI CCSGG 2 cut(s) 91, 845
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 626
Bse1I ACTGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 2 cut(s) 389, 862
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 3 cut(s) 278, 509, 623
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 2 cut(s) 252, 446
BseX3I CGGCCG 1 cut(s) 841
BseXI GCAGC 3 cut(s) 37, 260, 263
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 844
BshFI GGCC 2 cut(s) 282, 843
BsiEI CGRYCG 1 cut(s) 844
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 2 cut(s) 91, 844
BslFI GGGAC 1 cut(s) 700
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 2 cut(s) 282, 843
BsoBI CYCGRG 1 cut(s) 984
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 172, 502, 849, 1045
Bsp19I CCATGG 1 cut(s) 626
Bsp68I TCGCGA 1 cut(s) 82
BspACI CCGC 4 cut(s) 53, 235, 517, 980
BspANI GGCC 2 cut(s) 282, 843
BspCNI CTCAG 3 cut(s) 277, 508, 624
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 57, 222
BspMI ACCTGC 1 cut(s) 995
BspPI GGATC 1 cut(s) 1040
BspT104I TTCGAA 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 1 cut(s) 729
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 4 cut(s) 172, 502, 849, 1045
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 626
Bst4CI ACNGT 3 cut(s) 156, 775, 962
Bst6I CTCTTC 2 cut(s) 693, 741
BstACI GRCGYC 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 10, 1002
BstDEI CTNAG 4 cut(s) 264, 446, 495, 632
BstDSI CCRYGG 1 cut(s) 626
BstF5I GGATG 2 cut(s) 389, 862
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 4 cut(s) 175, 505, 852, 1048
BstMBI GATC 4 cut(s) 172, 502, 849, 1045
BstMCI CGRYCG 1 cut(s) 844
BstMWI GCNNNNNNNGC 2 cut(s) 14, 234
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 2 cut(s) 89, 843
BstSFI CTRYAG 1 cut(s) 642
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 37, 260, 263
BstZI CGGCCG 1 cut(s) 841
BsuRI GGCC 2 cut(s) 282, 843
BtgI CCRYGG 1 cut(s) 626
BtsCI GGATG 2 cut(s) 389, 862
BtsIMutI CAGTG 1 cut(s) 882
BtuMI TCGCGA 1 cut(s) 82
BveI ACCTGC 1 cut(s) 995
Cac8I GCNNGC 2 cut(s) 10, 1002
CciI TCATGA 1 cut(s) 598
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 863
CviAII CATG 5 cut(s) 316, 599, 627, 914, 933
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 4 cut(s) 264, 446, 495, 632
DpnI GATC 4 cut(s) 174, 504, 851, 1047
DpnII GATC 4 cut(s) 172, 502, 849, 1045
DraI TTTAAA 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 841
EagI CGGCCG 1 cut(s) 841
Eam1104I CTCTTC 2 cut(s) 693, 741
EarI CTCTTC 2 cut(s) 693, 741
Ecl136II GAGCTC 1 cut(s) 568
EclXI CGGCCG 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 570
Eco52I CGGCCG 1 cut(s) 841
Eco53kI GAGCTC 1 cut(s) 568
Eco88I CYCGRG 1 cut(s) 984
EcoICRI GAGCTC 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 626
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 5 cut(s) 319, 602, 630, 917, 936
FaqI GGGAC 1 cut(s) 700
FatI CATG 5 cut(s) 315, 598, 626, 913, 932
FbaI TGATCA 1 cut(s) 849
Fnu4HI GCNGC 4 cut(s) 51, 249, 252, 981
FokI GGATG 2 cut(s) 396, 869
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 4 cut(s) 51, 249, 252, 981
GluI GCNGC 4 cut(s) 51, 249, 252, 981
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 282, 843
HapII CCGG 2 cut(s) 91, 844
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 5 cut(s) 319, 602, 630, 917, 936
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 1053
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 91, 844
HphI GGTGA 4 cut(s) 615, 859, 1000, 1019
Hpy166II GTNNAC 5 cut(s) 389, 416, 514, 623, 991
Hpy188I TCNGA 8 cut(s) 172, 177, 343, 353, 397, 424, 469, 1060
Hpy188III TCNNGA 5 cut(s) 81, 506, 599, 695, 709
Hpy8I GTNNAC 5 cut(s) 389, 416, 514, 623, 991
HpyAV CCTTC 2 cut(s) 362, 562
HpyCH4III ACNGT 3 cut(s) 156, 775, 962
HpyCH4IV ACGT 4 cut(s) 167, 358, 510, 1024
HpyCH4V TGCA 2 cut(s) 248, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 234
HpyF3I CTNAG 4 cut(s) 264, 446, 495, 632
HpySE526I ACGT 4 cut(s) 167, 358, 510, 1024
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 5 cut(s) 319, 602, 630, 917, 936
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 4 cut(s) 172, 502, 849, 1045
LmnI GCTCC 1 cut(s) 811
Lsp1109I GCAGC 3 cut(s) 37, 260, 263
LweI GCATC 4 cut(s) 26, 486, 538, 847
MaeII ACGT 4 cut(s) 167, 358, 510, 1024
MaeIII GTNAC 4 cut(s) 85, 267, 928, 1069
MalI GATC 4 cut(s) 174, 504, 851, 1047
MboI GATC 4 cut(s) 172, 502, 849, 1045
MboII GAAGA 7 cut(s) 63, 112, 680, 683, 728, 845, 1025
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 8 cut(s) 180, 346, 372, 537, 561, 653, 663, 803
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 7 cut(s) 88, 273, 467, 570, 627, 913, 1059
MroXI GAANNNNTTC 2 cut(s) 372, 537
MseI TTAA 4 cut(s) 104, 144, 189, 617
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 980
MspI CCGG 2 cut(s) 91, 844
MspR9I CCNGG 2 cut(s) 91, 845
Mva1269I GAATGC 1 cut(s) 250
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 14, 234
NciI CCSGG 2 cut(s) 91, 845
NcoI CCATGG 1 cut(s) 626
NdeII GATC 4 cut(s) 172, 502, 849, 1045
NlaIII CATG 5 cut(s) 319, 602, 630, 917, 936
NlaIV GGNNCC 2 cut(s) 57, 222
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 928
NruI TCGCGA 1 cut(s) 82
NspI RCATGY 1 cut(s) 917
NspV TTCGAA 1 cut(s) 376
PagI TCATGA 1 cut(s) 598
PaqCI CACCTGC 1 cut(s) 995
PciI ACATGT 1 cut(s) 913
PctI GAATGC 1 cut(s) 250
PdmI GAANNNNTTC 2 cut(s) 372, 537
PkrI GCNGC 4 cut(s) 52, 250, 253, 982
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PscI ACATGT 1 cut(s) 913
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 570
Psp1406I AACGTT 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 57, 222
RruI TCGCGA 1 cut(s) 82
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 4 cut(s) 104, 144, 189, 617
SatI GCNGC 4 cut(s) 51, 249, 252, 981
Sau3AI GATC 4 cut(s) 172, 502, 849, 1045
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 91, 845
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 4 cut(s) 26, 486, 538, 847
SfcI CTRYAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 3 cut(s) 308, 458, 1050
SmoI CTYRAG 3 cut(s) 308, 458, 1050
Sse9I AATT 8 cut(s) 180, 346, 372, 537, 561, 653, 663, 803
SsiI CCGC 4 cut(s) 53, 235, 517, 980
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 89, 843
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 3 cut(s) 156, 775, 962
TaiI ACGT 4 cut(s) 170, 361, 513, 1027
TaqI TCGA 1 cut(s) 376
TasI AATT 8 cut(s) 180, 346, 372, 537, 561, 653, 663, 803
TauI GCSGC 1 cut(s) 983
Tru1I TTAA 4 cut(s) 104, 144, 189, 617
Tru9I TTAA 4 cut(s) 104, 144, 189, 617
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 3 cut(s) 50, 248, 251
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 6 cut(s) 112, 783, 804, 816, 1026, 1077
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 889
XapI RAATTY 2 cut(s) 372, 803
XceI RCATGY 1 cut(s) 917
XmnI GAANNNNTTC 2 cut(s) 372, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.