Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029639

Physical Location & Seq

Genomic Coordinates Forward (+)

48278883 .. 48283726

Gene Structure 4844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAAAATTGATCTTTTCAGACGGTTTAAACGTGCTGGAGAATCATATGTTAAGGTGCCCTTCTTTGGAGCTGTTTCATATTTGACACTAGCTGTCGCTCCCTTCTGCATAGCATTTGCTGTTGTTTGGGCAGTGTATCGCCGTGTGTCATTTGCTTGGATTGGCCAAGATATCCTTTTCTGTTTTTTGACGAGAAGGAACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

68

Amino Acids

8.02

Weight (kDa)

10.29

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	9 - 60	6.6e-07	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0029639)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355641
rosa_multiflora	Rmu_co8273481.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	71, 92
AluI	AGCT	2 cut(s)	71, 92
AoxI	GGCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	24
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
CviJI	RGCY	3 cut(s)	71, 92, 165
CviKI_1	RGCY	3 cut(s)	71, 92, 165
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
DraI	TTTAAA	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	172
FaiI	YATR	4 cut(s)	46, 48, 79, 110
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 159, 191
FauNDI	CATATG	1 cut(s)	46
FspBI	CTAG	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	70, 112, 189
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	68, 103
LpnPI	CCDG	2 cut(s)	21, 187
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	31
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	1 cut(s)	6
MluNI	TGGCCA	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	27, 51
Msp20I	TGGCCA	1 cut(s)	165
MssI	GTTTAAAC	1 cut(s)	28
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	41
PmeI	GTTTAAAC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	27, 51
Sau3AI	GATC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	4 cut(s)	34, 57, 73, 94
SgeI	CNNG	6 cut(s)	44, 48, 101, 155, 168, 179
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	34
TasI	AATT	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	27, 51
Tru9I	TTAA	2 cut(s)	27, 51
TscAI	CASTG	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	17, 66
TspRI	CASTG	1 cut(s)	138
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.