Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029648

Physical Location & Seq

Genomic Coordinates Reverse (-)

49365468 .. 49365818

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGATGCCCAGATTTTTAGTAGCATTGTTGGTGGGTGCAGAGGCGTTAGCAGCCTCACCCTCAATTGCCTGCTCCTAAATGACTCGTTGTTGGTGGTTTTTTTGGGCAAGCATCTCCAAGAACTGAACTTGCTGTGCTGCTCCTTGATGTTGTATCAAGTCCTTGCTCATGTAATTCGTGTTGTTTTTTTGGATTGTTCATTGGCTTTGTGTTTTGCAACAATTTTCGTGTTGAGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_6

Protein Analysis

80

Amino Acids

8.68

Weight (kDa)

5.96

Isoelectric Point (pI)

20.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	2 - 55	7.9e-07	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0029648)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356981
rosa_samantha	Rh1CG205000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
ApeKI	GCWGC	2 cut(s)	51, 138
AsuHPI	GGTGA	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	63, 125
BisI	GCNGC	2 cut(s)	52, 139
BlsI	GCNGC	2 cut(s)	53, 140
BmsI	GCATC	1 cut(s)	121
BseGI	GGATG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	63, 125
BsgI	GTGCAG	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	71, 110
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	63, 125
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	71, 110
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	2 cut(s)	54, 206
CviKI_1	RGCY	2 cut(s)	54, 206
FaeI	CATG	1 cut(s)	173
FaiI	YATR	1 cut(s)	171
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	52, 139
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	52, 139
GluI	GCNGC	2 cut(s)	52, 139
Hin1II	CATG	1 cut(s)	173
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	39, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	78, 146
LpnPI	CCDG	2 cut(s)	23, 83
Lsp1109I	GCAGC	2 cut(s)	63, 125
LweI	GCATC	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	64
MluCI	AATT	3 cut(s)	64, 174, 222
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	35, 65, 71
MunI	CAATTG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	53, 140
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	52, 139
SchI	GAGTC	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	121
Sse9I	AATT	3 cut(s)	64, 174, 222
TasI	AATT	3 cut(s)	64, 174, 222
TseI	GCWGC	2 cut(s)	51, 138
TspDTI	ATGAA	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.