Rh1CG205000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0029648
Physical Location & Seq
Forward (+)
44523804 .. 44535287
11484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG205000.1

Sequence Viewer

Length: 222 bp
ATGAGTGCCCAGACTGGTGGGTGCAGAGGCGTTCGTAGCCTTACCCTCAATTGTCTAGGCCTAAATGACTCGTCGTTGGTGGTTTTTCTGAGCAAGCATCTCCAAGAACTGAACTTGCTATGCTACTCCTTGATGTTGTATCAAGTCCTTGCTTCCGCTGGAGAGACTTTCCCCAATCTCAGAGTGGATGAAAGGCACGCGGTCCGCAGGTGGCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

73

Amino Acids

8.18

Weight (kDa)

8.63

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 9 - 62 8.3e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029648)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0356981
rosa_samantha Rh1CG205000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 198
AccII CGCG 1 cut(s) 200
AciI CCGC 3 cut(s) 156, 200, 205
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 80, 193
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 10
BspACI CCGC 3 cut(s) 156, 200, 205
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 81, 192
BspFNI CGCG 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 95, 198
BstDEI CTNAG 2 cut(s) 89, 179
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 95, 198
Cfr13I GGNCC 1 cut(s) 202
CpoI CGGWCCG 1 cut(s) 202
CspI CGGWCCG 1 cut(s) 202
CviJI RGCY 3 cut(s) 39, 60, 214
CviKI_1 RGCY 3 cut(s) 39, 60, 214
DdeI CTNAG 2 cut(s) 89, 179
Eco147I AGGCCT 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 202
FaiI YATR 1 cut(s) 121
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 60
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 90, 182
Hpy99I CGWCG 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 89, 179
LpnPI CCDG 3 cut(s) 23, 144, 193
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 56
MfeI CAATTG 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 49, 217
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 2 cut(s) 20, 56
MseI TTAA 2 cut(s) 216, 220
MspA1I CMGCKG 1 cut(s) 158
MunI CAATTG 1 cut(s) 49
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 36
PacI TTAATTAA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 198
PceI AGGCCT 1 cut(s) 60
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 202
Rsr2I CGGWCCG 1 cut(s) 202
RsrII CGGWCCG 1 cut(s) 202
SaqAI TTAA 2 cut(s) 216, 220
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 10
SetI ASST 1 cut(s) 212
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 202
Sse9I AATT 2 cut(s) 49, 217
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 3 cut(s) 156, 200, 205
SspMI CTAG 1 cut(s) 56
StuI AGGCCT 1 cut(s) 60
TasI AATT 2 cut(s) 49, 217
Tru1I TTAA 2 cut(s) 216, 220
Tru9I TTAA 2 cut(s) 216, 220
TspDTI ATGAA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.