Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029635

Physical Location & Seq

Genomic Coordinates Forward (+)

50792308 .. 50792513

Gene Structure 206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58383

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTTCTTATTTTTTATCTTGGTGGCGGTACTTTCGATGTTTCCCTTCTTAAAATTGAAGAACGTATTTACAGCTGGTGATGCTCATCTTGGGGGTGAAGATTTTGATAATAGAATAGTGAATTATTTTGTACAAGAGTTCCGACAGAAGTACGAAAAGGACGTCAGTAATACCCCAAAGCACCAAGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

64

Amino Acids

7.47

Weight (kDa)

6.03

Isoelectric Point (pI)

20.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	22 - 60	5.9e-11	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0358731 RchiOBHm_Chr6g0245091

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AciI	CCGC	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	3 cut(s)	30, 132, 152
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AsuHPI	GGTGA	2 cut(s)	89, 107
BmsI	GCATC	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	130
BspACI	CCGC	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	29, 131, 151
CviJI	RGCY	1 cut(s)	74
CviKI_1	RGCY	1 cut(s)	74
CviQI	GTAC	3 cut(s)	29, 131, 151
Eco130I	CCWWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	162
HphI	GGTGA	2 cut(s)	89, 107
Hpy188I	TCNGA	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	63, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	63, 162
Hsp92I	GRCGYC	1 cut(s)	162
LpnPI	CCDG	1 cut(s)	60
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	2 cut(s)	63, 162
MboII	GAAGA	2 cut(s)	70, 110
MluCI	AATT	2 cut(s)	53, 121
MmeI	TCCRAC	1 cut(s)	166
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	30, 132, 152
RsaNI	GTAC	3 cut(s)	29, 131, 151
SaqAI	TTAA	1 cut(s)	50
SetI	ASST	3 cut(s)	66, 76, 165
SfaNI	GCATC	1 cut(s)	70
SgeI	CNNG	4 cut(s)	31, 87, 101, 146
Sse9I	AATT	2 cut(s)	53, 121
SsiI	CCGC	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	184
TaiI	ACGT	2 cut(s)	66, 165
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	53, 121
TatI	WGTACW	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.