RchiOBHm_Chr6g0245091
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
1028290 .. 1029385
1096 bp
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UTR
Exon/CDS
Intron
PRQ21966

Sequence Viewer

Length: 438 bp
ATGCTGCCAAGAACCAAGTCACCATCAACCCTATCACACTATGCAAAGCGATTGATTGGCAGGAAATTTAGTGATGCATGTGTTAAGAGTGATATGAAATTATGGCCTTTCAAGGTTCGTGGTGTGGGTGACAAGCCTATGATTATGATCAACTACAAGAATGAAAAGAAACAATTTGCCGCTGAGGAGATATCTTCAATGGTTCTCCATAAGATGCGCGAAATTGCAGAGGCCTATCTTGGACTAACAATAAAGAATGTAAAAACTACTGCCGGAGATACACATCTTGGGGGAGAAGACTTTGACAATAGAATGGTGAACCATTTTGTGCAAGAGTTCGAGAAGAAACACAGGAAGGACATCAGCAATGACCCCAAAGCACTGAGAAGATTGAGAACATTTGTGAGAGAGCAAAAGGACTCTTTCTTCAACTGCTGA
Functional Annotation

Protein Analysis

145

Amino Acids

16.9

Weight (kDa)

9.81

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 14 - 86 2.2e-16 Hsp70 protein
HSP70 PF00012 86 - 139 5.6e-16 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029635)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0358731 RchiOBHm_Chr6g0245091

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 219
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 3 cut(s) 112, 198, 430
AoxI GGCC 2 cut(s) 104, 231
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 12, 140, 328
BbsI GAAGAC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 31
BclI TGATCA 1 cut(s) 147
BisI GCNGC 2 cut(s) 5, 180
BlsI GCNGC 2 cut(s) 6, 181
BmsI GCATC 2 cut(s) 64, 204
BpiI GAAGAC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 183
BsaBI GATNNNNATC 2 cut(s) 146, 282
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 2 cut(s) 146, 282
BseJI GATNNNNATC 2 cut(s) 146, 282
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 174, 374
BseRI GAGGAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 106, 233
BsiSI CCGG 1 cut(s) 273
BsnI GGCC 2 cut(s) 106, 233
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 106, 233
BspCNI CTCAG 2 cut(s) 175, 375
BspFNI CGCG 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 373
BssMI GATC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 183, 383
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 81
BstUI CGCG 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 106, 233
BtsIMutI CAGTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 219
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 78
CviJI RGCY 3 cut(s) 106, 136, 233
CviKI_1 RGCY 3 cut(s) 106, 136, 233
DdeI CTNAG 2 cut(s) 183, 383
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 233
Eco32I GATATC 1 cut(s) 192
EcoRV GATATC 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 79
FaeI CATG 1 cut(s) 81
FaiI YATR 7 cut(s) 42, 79, 95, 103, 140, 146, 210
FatI CATG 1 cut(s) 77
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 5, 180
Fsp4HI GCNGC 2 cut(s) 5, 180
GlaI GCGC 1 cut(s) 218
GluI GCNGC 2 cut(s) 5, 180
HaeIII GGCC 2 cut(s) 106, 233
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 219
Hin1II CATG 1 cut(s) 81
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 1 cut(s) 419
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 12, 140, 328
Hpy166II GTNNAC 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 349
HpyCH4V TGCA 4 cut(s) 44, 77, 227, 331
HpyF3I CTNAG 2 cut(s) 183, 383
Hsp92II CATG 1 cut(s) 81
HspAI GCGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 46, 286, 337
LweI GCATC 2 cut(s) 64, 204
MaeIII GTNAC 2 cut(s) 18, 128
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 5 cut(s) 186, 308, 355, 399, 418
MluCI AATT 4 cut(s) 65, 98, 173, 222
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 2 cut(s) 178, 223
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 219
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 18, 128
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 81
PceI AGGCCT 1 cut(s) 233
PkrI GCNGC 2 cut(s) 6, 181
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 5, 180
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 1 cut(s) 413
SetI ASST 1 cut(s) 117
SfaNI GCATC 2 cut(s) 64, 204
Sse9I AATT 4 cut(s) 65, 98, 173, 222
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 233
TaqI TCGA 1 cut(s) 339
TasI AATT 4 cut(s) 65, 98, 173, 222
TauI GCSGC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 2 cut(s) 18, 128
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 18, 128
TspDTI ATGAA 2 cut(s) 110, 177
TspRI CASTG 1 cut(s) 387
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.