Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029698

Physical Location & Seq

Genomic Coordinates Forward (+)

54091900 .. 54093247

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCAACATCGTCGACGGCAGAGATTCGTCCCCCGTCGCCGCCCGGGAAGAGCATCGTCGAGAAGCGGTTCACGGTCCCCAACGTCGTCGGCGAGTCTGGGGTTTCCGTCGACGACCTCGGCCACCACGCCGGTTACTTCAAGATCGAGCATTCTCACGCCGCCAGTTTGAAATGCTGGGCTGTAAACGAAGCTCTTGATACAGCACTAGATTCAGAAGATATAGAAGAGGAAACTGAAGAAGAAGTTGACAAGGTTCTGAGTGAAATAGTTGGTGAGTCGACTGCACAGCTTCCAGAAGCTGTCAGGAAAGGGAGGACAAAGTTACCTGCCCAGAGAGCTGGTTCTTCACAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

120

Amino Acids

12.92

Weight (kDa)

4.75

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362451
rosa_wichuraiana	Rw0G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	3 cut(s)	14, 111, 281
AciI	CCGC	3 cut(s)	41, 67, 162
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	142, 172
AluBI	AGCT	4 cut(s)	194, 292, 302, 341
AluI	AGCT	4 cut(s)	194, 292, 302, 341
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	121
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	45, 46
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	45, 46
BfaI	CTAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	41, 162
BlsI	GCNGC	2 cut(s)	42, 163
Bme1390I	CCNGG	2 cut(s)	45, 46
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	45, 46
BmsI	GCATC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	45, 46
BsaJI	CCNNGG	2 cut(s)	44, 118
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	44, 118
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	45, 132
BslFI	GGGAC	2 cut(s)	15, 62
BsmFI	GGGAC	2 cut(s)	15, 62
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	41, 67, 162
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	44, 118
BssMI	GATC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	44, 222
BstDEI	CTNAG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	43, 44
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	76
Cfr9I	CCCGGG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	123, 182, 194, 292, 302, 341
CviKI_1	RGCY	6 cut(s)	123, 182, 194, 292, 302, 341
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	44, 222
EarI	CTCTTC	2 cut(s)	44, 222
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	44
FaiI	YATR	1 cut(s)	224
FaqI	GGGAC	2 cut(s)	15, 62
FblI	GTMKAC	3 cut(s)	14, 111, 281
Fnu4HI	GCNGC	2 cut(s)	41, 162
Fsp4HI	GCNGC	2 cut(s)	41, 162
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	41, 162
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	45, 132
HincII	GTYRAC	4 cut(s)	15, 112, 250, 282
HindII	GTYRAC	4 cut(s)	15, 112, 250, 282
HinfI	GANTC	4 cut(s)	25, 95, 212, 278
HpaII	CCGG	2 cut(s)	45, 132
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	6 cut(s)	15, 72, 112, 187, 250, 282
Hpy188I	TCNGA	2 cut(s)	217, 261
Hpy188III	TCNNGA	5 cut(s)	61, 142, 197, 296, 307
Hpy8I	GTNNAC	6 cut(s)	15, 72, 112, 187, 250, 282
Hpy99I	CGWCG	8 cut(s)	16, 19, 40, 62, 89, 92, 113, 116
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	144
LguI	GCTCTTC	1 cut(s)	44
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	134, 324
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	6 cut(s)	61, 230, 239, 251, 254, 339
MlyI	GAGTC	2 cut(s)	104, 287
MnlI	CCTC	3 cut(s)	128, 223, 309
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	2 cut(s)	45, 132
MspR9I	CCNGG	2 cut(s)	45, 46
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	2 cut(s)	45, 46
NdeII	GATC	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	25, 212
PkrI	GCNGC	2 cut(s)	42, 163
PleI	GAGTC	2 cut(s)	103, 286
PpsI	GAGTC	2 cut(s)	103, 286
PspFI	CCCAGC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	302
SalI	GTCGAC	3 cut(s)	13, 110, 280
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	2 cut(s)	41, 162
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	104, 287
ScrFI	CCNGG	2 cut(s)	45, 46
SetI	ASST	8 cut(s)	87, 120, 196, 258, 294, 304, 331, 343
SfaNI	GCATC	1 cut(s)	63
SgrDI	CGTCGACG	2 cut(s)	13, 110
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	46
SsiI	CCGC	3 cut(s)	41, 67, 162
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	43, 44
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	14, 60, 111, 147, 281
TauI	GCSGC	2 cut(s)	43, 164
TfiI	GAWTC	2 cut(s)	25, 212
TspGWI	ACGGA	1 cut(s)	97
TspMI	CCCGGG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	44
XmiI	GTMKAC	3 cut(s)	14, 111, 281
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.