Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00912

Orthogroup ID

OG0029698

Physical Location & Seq

Genomic Coordinates Forward (+)

14455 .. 15349

Gene Structure 895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCAACATCGTCGACGGCGGAGATTCGTCCCCCGTCGCCGCCCGGGAAGAGCATCGTCGAGAAGCGGTTCACGGTCCCTAACGTCGTCGGCGAGTCTGGGGTTTCCGTCGACGACCTCGGCCACCACGCCGGTTACTTCAAGATCGAGCATTCTCACGCCGCCAGGTCAGGTCTCCAAACGTTTCAGGGCTGGGCTGTAAACGAAGCTCTTGATACAGCAGTAGATTCAGAAGATATAGAAGAGGAAACTGAAGAAGAAGTTGACAAGGTTCTGAGTGAAATAGTTGGTGAGTCGAGTGCACAGCTTCCAGAAGCTGTCAGGAAAGGGAGGACAAAGTTACCTGCCCAGAGAGCTGGTTCTTCACAAGAAGAATTAGCTATAGCAGAGGGTGAAGATGATGAGGCAGAATTGGAAGTATTGATTGCATGTCAAGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

147

Amino Acids

15.81

Weight (kDa)

4.47

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362451
rosa_wichuraiana	Rw0G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccI	GTMKAC	2 cut(s)	14, 111
AciI	CCGC	4 cut(s)	20, 41, 67, 162
AclI	AACGTT	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	5 cut(s)	209, 307, 317, 356, 380
AluI	AGCT	5 cut(s)	209, 307, 317, 356, 380
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	179
Alw44I	GTGCAC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	121
ApaLI	GTGCAC	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	45, 46
AsuHPI	GGTGA	2 cut(s)	302, 404
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
Bbv12I	GWGCWC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	2 cut(s)	45, 46
BcoDI	GTCTC	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	41, 162
BlsI	GCNGC	2 cut(s)	42, 163
Bme1390I	CCNGG	3 cut(s)	45, 46, 166
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	3 cut(s)	45, 46, 166
BmsI	GCATC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	45, 46
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	44, 118
Bse118I	RCCGGY	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	44, 118
BseMII	CTCAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	45, 132
BslFI	GGGAC	2 cut(s)	15, 62
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	15, 62
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	4 cut(s)	20, 41, 67, 162
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	44, 118
BssMI	GATC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	44, 237
BstDEI	CTNAG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	3 cut(s)	43, 44, 164
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	76
Cfr9I	CCCGGG	1 cut(s)	44
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	8 cut(s)	123, 192, 197, 209, 307, 317, 356, 380
CviKI_1	RGCY	8 cut(s)	123, 192, 197, 209, 307, 317, 356, 380
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	44, 237
EarI	CTCTTC	2 cut(s)	44, 237
EciI	GGCGGA	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	432
FaiI	YATR	3 cut(s)	239, 383, 430
FaqI	GGGAC	2 cut(s)	15, 62
FatI	CATG	1 cut(s)	428
FblI	GTMKAC	2 cut(s)	14, 111
Fnu4HI	GCNGC	2 cut(s)	41, 162
Fsp4HI	GCNGC	2 cut(s)	41, 162
GluI	GCNGC	2 cut(s)	41, 162
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	45, 132
Hin1II	CATG	1 cut(s)	432
HincII	GTYRAC	3 cut(s)	15, 112, 265
HindII	GTYRAC	3 cut(s)	15, 112, 265
HinfI	GANTC	4 cut(s)	25, 95, 227, 293
HpaII	CCGG	2 cut(s)	45, 132
HphI	GGTGA	2 cut(s)	302, 404
Hpy166II	GTNNAC	6 cut(s)	15, 72, 112, 202, 265, 302
Hpy188I	TCNGA	2 cut(s)	232, 276
Hpy188III	TCNNGA	5 cut(s)	61, 142, 212, 311, 322
Hpy8I	GTNNAC	6 cut(s)	15, 72, 112, 202, 265, 302
Hpy99I	CGWCG	8 cut(s)	16, 19, 40, 62, 89, 92, 113, 116
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	84, 182
HpyCH4V	TGCA	2 cut(s)	302, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	84, 182
Hsp92II	CATG	1 cut(s)	432
Kzo9I	GATC	1 cut(s)	144
LguI	GCTCTTC	1 cut(s)	44
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	2 cut(s)	84, 182
MaeIII	GTNAC	2 cut(s)	134, 339
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	8 cut(s)	61, 245, 254, 266, 269, 354, 383, 407
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	2 cut(s)	374, 410
MlyI	GAGTC	2 cut(s)	104, 302
MnlI	CCTC	5 cut(s)	128, 238, 324, 382, 397
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	2 cut(s)	45, 132
MspR9I	CCNGG	3 cut(s)	45, 46, 166
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	2 cut(s)	45, 46
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	99
NspI	RCATGY	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	25, 227
PkrI	GCNGC	2 cut(s)	42, 163
PleI	GAGTC	2 cut(s)	103, 301
PpsI	GAGTC	2 cut(s)	103, 301
Psp1406I	AACGTT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	317
SalI	GTCGAC	2 cut(s)	13, 110
SapI	GCTCTTC	1 cut(s)	44
SatI	GCNGC	2 cut(s)	41, 162
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	104, 302
ScrFI	CCNGG	3 cut(s)	45, 46, 166
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	381
SgrDI	CGTCGACG	2 cut(s)	13, 110
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	46
Sse9I	AATT	2 cut(s)	374, 410
SsiI	CCGC	4 cut(s)	20, 41, 67, 162
StyD4I	CCNGG	3 cut(s)	43, 44, 164
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	87, 185
TaqI	TCGA	5 cut(s)	14, 60, 111, 147, 296
TasI	AATT	2 cut(s)	374, 410
TauI	GCSGC	2 cut(s)	43, 164
TfiI	GAWTC	2 cut(s)	25, 227
TspGWI	ACGGA	1 cut(s)	97
TspMI	CCCGGG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	432
XmaI	CCCGGG	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	14, 111
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.