RchiOBHm_Chr1g0362691

Apoptosis inhibitor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
54306329 .. 54312100
5772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58750

Sequence Viewer

Length: 2112 bp
ATGGCGGCGGCAGCAGCAGACGAGGCCATGCACATTGAGAAGCCCTACCTGTTCGGCGAGCGACTCAACAAGTCCCAGAATATGAAAGACTACCAGGGGTTTACCAATGCGGCAAAGATGAGCCTGAAGTACAGGCAGCTCGCTGCACAGCTTATTCAGAGGGTGTTAGATTTCTTCCCCGAATTTTCTTCGTCGTCACCGGCAATAGATATTCACCTTGATTTAAGTGAAAGACAAGTAGAACAACAGCTGGGGGTTCGAGTGCAAGCTAGCGGGGGGCATCCCCTTTTCTTGAAGGACACCCGTGAATATATCTTGAAGATTGTACGCATTCTTGTGCAATCCCTACAAGCTGATGAGTATGTCGAGCGTGATGCTGCGCGTAAGGCTCTTATGGCCCTTTTGAGGAGCCTGGATGTGAAAGCTTCTTTTACAGCCTTGTTCAAGCACATCGGGACTGTTGATGACCCAAGCCAAGATGATGTTATTCGTGAGAAATTCCTAAGCTTTATCAGAGATAAGGTATTTCCTATTAAAGCTGAAGTTCTGAAGCTTCAGGAGCAAATGGAGAGGCATATTACTTACTTGATAAAAAAGATTCTAGAAGATGTAACTGGAGCAGAATTTAGAATGTTTATGGACTTCTTGAAAAGTTTGAACATTTTTGGGGAGAAAGCTCCGAAAAAATGCATGGTAGAACTAATTGGAATCGTTGAAGGACAGGCTGATTTAGATGCTCAGTTCAATGTTTCAGATGCAGACCATATCGGCAGGTTGATATCTTACCTATTTATGGTCCTGCCATTTATTCTGGATGGTGCGTCAAGCAGCAAATTTCTCATCCTTCCTGTTTTGGATAAGCTTCCAAATGAACGAAGGCTAGAATTGCTCAAGGCCCTCGCAGAAGTTGCACCATTCACCACACCAGAAGATTCACGTCATATTCTTCCGTCTGTGGTTCAGCCTGTAAAGCAAACTGAAAAGCCGAATACCACGACTCAGTGGCGAACCTCCAATGACATATTGGCAATGACTAAGGTACTGCTTTCAAAAGAACCTTCATTTATTGGAGACAAGAGCCTCAACTTGTCTTGGAAAGAACTGCCTAAAGCTGCTGTGCCTTCTAACAGACTGGCCAAAAGATTCAAAGGGACTAGTACAGCGGCTGTTATTGGAAGTCATGAAGTGTATCTAGTAGCAGAAAGCAGGTCATCATCATCTGAAGAAGGTGAAAAAGGACGTATTAAGTCTGGAAATGCGGATAAACTACGAGTGATAAACGATTATATTGTTGCTGCTTTGGCTGGAAACAGTGGAGAGTCGATAAAGATGATTGAGGAGGCACAAAAAGCAGTGGGAGAAGAAAATGATATATATAAAGTACAGACGGCATGTGAGCAATATATTACTGAATGGAAGGGGAGACCAGGGAATAAAGACAAAGGATTCCCAGCTAGAGTTACCCTTTGCGGGTGGTATGGATCAGAATTTGTGATTGTTGTGGTGGGATGGGAGAAAAAGGTGGAAAAAAACAAGGATGTTTTAGTAGCAACTGGGAGCGGACAGGAATATGTTGAAGAATATGTAAATGATCAATTGAGAGGGAACAAGTTTAATGGTGATCAAGATTACTTAGATTGTTTGTGTACAGGGGTTGCGTATTCATGCATGCGCACATCATGGAGTGGGGGCATTATCAAGGCCGCTGTGGTCCCTATGGGAGGCAAAGTAGAACTTTTGTGGCTCTCACATGCATTAGCAGCCCTCTGGTTATATCATCATGATCTTAAAAATTATTGGGACAAGAGTTTGTTGTGTGTGAGTAGGGGCTTCAGATATTCACACAAGCGCGAGATAGATTTAAAGCATAAGATTGTAGGGCATGTGGGAACAGTAGTGGCATTCCATGTGTTAGGTGTTAGCACTGACTATATAGTTAGGGTAATAGAATTTCCTACTATTGATGCCAAGGGGGCTGCATTCCGTACTTTGGCAGTTCAGTTTCTTCAAGAGAAAGACAAGTTTAATGTCTACATACCCACAGCTGATGCCATTAAATTGGTTAGCAAGGAGTTCGAAACTATAATTCCAGAATCTGATGACTTTTTGTAG

Protein Analysis

703

Amino Acids

79.0

Weight (kDa)

6.76

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
API5 PF05918 12 - 324 2.1e-98 Apoptosis inhibitory protein 5 (API5)
API5 PF05918 324 - 428 1.2e-07 Apoptosis inhibitory protein 5 (API5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029581)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0362691
rosa_roxburghii Rroxscaffold_4G00317060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1673
Acc36I ACCTGC 2 cut(s) 762, 1197
AccBSI CCGCTC 1 cut(s) 1560
AccI GTMKAC 1 cut(s) 2031
AccII CGCG 2 cut(s) 382, 1851
AciI CCGC 9 cut(s) 5, 8, 110, 273, 1163, 1259, 1470, 1560, 1704
AclWI GGATC 1 cut(s) 1489
AcoI YGGCCR 1 cut(s) 1134
AcsI RAATTY 6 cut(s) 182, 497, 623, 833, 1487, 1949
AcuI CTGAAG 6 cut(s) 146, 539, 561, 569, 1242, 1816
AfaI GTAC 7 cut(s) 131, 327, 1041, 1159, 1383, 1648, 1987
AfiI CCNNNNNNNGG 5 cut(s) 405, 793, 1470, 1721, 1990
AhlI ACTAGT 1 cut(s) 1154
AjiI CACGTC 1 cut(s) 938
AjnI CCWGG 3 cut(s) 93, 411, 1426
Alw26I GTCTC 2 cut(s) 1065, 1417
AlwI GGATC 1 cut(s) 1489
AlwNI CAGNNNCTG 2 cut(s) 1166, 2096
AoxI GGCC 5 cut(s) 24, 396, 894, 1134, 1701
ApoI RAATTY 6 cut(s) 182, 497, 623, 833, 1487, 1949
AspLEI GCGC 3 cut(s) 382, 1674, 1851
AspS9I GGNCC 4 cut(s) 397, 796, 895, 1711
AsuHPI GGTGA 5 cut(s) 189, 206, 910, 1241, 1631
AsuII TTCGAA 1 cut(s) 2076
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 2 cut(s) 796, 1711
BalI TGGCCA 1 cut(s) 1136
BccI CCATC 2 cut(s) 809, 1503
BceAI ACGGC 1 cut(s) 1404
BcgI CGANNNNNNTGC 4 cut(s) 356, 390, 2056, 2090
BciT130I CCWGG 3 cut(s) 95, 413, 1428
BclI TGATCA 2 cut(s) 1591, 1621
BcoDI GTCTC 2 cut(s) 1065, 1417
BcuI ACTAGT 1 cut(s) 1154
BfaI CTAG 6 cut(s) 270, 602, 881, 1155, 1193, 1455
BfuAI ACCTGC 2 cut(s) 762, 1197
BglI GCCNNNNNGGC 1 cut(s) 1973
Bme1390I CCNGG 3 cut(s) 95, 413, 1428
Bme18I GGWCC 2 cut(s) 796, 1711
BmgBI CACGTC 1 cut(s) 938
BmgT120I GGNCC 4 cut(s) 397, 796, 895, 1711
BmiI GGNNCC 2 cut(s) 410, 1713
BmrFI CCNGG 3 cut(s) 95, 413, 1428
BmrI ACTGGG 1 cut(s) 1563
BmsI GCATC 6 cut(s) 289, 364, 724, 745, 1954, 2038
BmtI GCTAGC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 1563
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 503
Bpu14I TTCGAA 1 cut(s) 2076
BpuEI CTTGAG 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 1417
BsaJI CCNNGG 3 cut(s) 94, 1427, 1968
BsaXI ACNNNNNCTCC 2 cut(s) 1713, 1743
Bsc4I CCNNNNNNNGG 5 cut(s) 405, 793, 1470, 1721, 1990
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 3 cut(s) 619, 1137, 1558
Bse3DI GCAATG 1 cut(s) 1035
BseBI CCWGG 3 cut(s) 95, 413, 1428
BseDI CCNNGG 3 cut(s) 94, 1427, 1968
BseGI GGATG 6 cut(s) 280, 421, 820, 840, 1514, 1543
BseLI CCNNNNNNNGG 5 cut(s) 405, 793, 1470, 1721, 1990
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 2 cut(s) 752, 1013
BseNI ACTGG 3 cut(s) 619, 1137, 1558
BseRI GAGGAG 2 cut(s) 421, 1352
BseYI CCCAGC 2 cut(s) 250, 1450
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 382, 1851
BshFI GGCC 5 cut(s) 26, 398, 896, 1136, 1703
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 5 cut(s) 58, 469, 1165, 1697, 1814
BslI CCNNNNNNNGG 5 cut(s) 405, 793, 1470, 1721, 1990
BsmAI GTCTC 2 cut(s) 1065, 1417
BsmFI GGGAC 5 cut(s) 58, 469, 1165, 1697, 1814
BsmI GAATGC 3 cut(s) 330, 1901, 1979
BsnI GGCC 5 cut(s) 26, 398, 896, 1136, 1703
Bso31I GGTCTC 1 cut(s) 1417
Bsp119I TTCGAA 1 cut(s) 2076
Bsp1407I TGTACA 1 cut(s) 1646
Bsp143I GATC 4 cut(s) 1481, 1591, 1621, 1783
BspACI CCGC 9 cut(s) 5, 8, 110, 273, 1163, 1259, 1470, 1560, 1704
BspANI GGCC 5 cut(s) 26, 398, 896, 1136, 1703
BspCNI CTCAG 2 cut(s) 751, 1012
BspFNI CGCG 2 cut(s) 382, 1851
BspHI TCATGA 2 cut(s) 1180, 1780
BspLI GGNNCC 2 cut(s) 410, 1713
BspMI ACCTGC 2 cut(s) 762, 1197
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 1489
BspT104I TTCGAA 1 cut(s) 2076
BspTNI GGTCTC 1 cut(s) 1417
BsrBI CCGCTC 1 cut(s) 1560
BsrDI GCAATG 1 cut(s) 1035
BsrFI RCCGGY 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 1646
BsrI ACTGG 3 cut(s) 619, 1137, 1558
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 94, 1427, 1968
BssMI GATC 4 cut(s) 1481, 1591, 1621, 1783
BssT1I CCWWGG 1 cut(s) 1968
Bst2UI CCWGG 3 cut(s) 95, 413, 1428
Bst4CI ACNGT 3 cut(s) 460, 1313, 1894
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 1 cut(s) 1646
BstBI TTCGAA 1 cut(s) 2076
BstC8I GCNNGC 5 cut(s) 59, 141, 267, 271, 1670
BstDEI CTNAG 5 cut(s) 503, 738, 999, 1035, 1633
BstENI CCTNNNNNAGG 1 cut(s) 1719
BstF5I GGATG 6 cut(s) 280, 421, 820, 840, 1514, 1543
BstFNI CGCG 2 cut(s) 382, 1851
BstHHI GCGC 3 cut(s) 382, 1674, 1851
BstKTI GATC 4 cut(s) 1484, 1594, 1624, 1786
BstMAI GTCTC 2 cut(s) 1065, 1417
BstMBI GATC 4 cut(s) 1481, 1591, 1621, 1783
BstNI CCWGG 3 cut(s) 95, 413, 1428
BstNSI RCATGY 4 cut(s) 1395, 1672, 1754, 1886
BstSCI CCNGG 3 cut(s) 93, 411, 1426
BstUI CGCG 2 cut(s) 382, 1851
BstXI CCANNNNNNTGG 1 cut(s) 2059
BsuRI GGCC 5 cut(s) 26, 398, 896, 1136, 1703
BtrI CACGTC 1 cut(s) 938
BtsCI GGATG 6 cut(s) 280, 421, 820, 840, 1514, 1543
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 4 cut(s) 1007, 1318, 1359, 1923
BveI ACCTGC 2 cut(s) 762, 1197
Cac8I GCNNGC 5 cut(s) 59, 141, 267, 271, 1670
CaiI CAGNNNCTG 2 cut(s) 1166, 2096
CciI TCATGA 2 cut(s) 1180, 1780
CfoI GCGC 3 cut(s) 382, 1674, 1851
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 4 cut(s) 397, 796, 895, 1711
CseI GACGC 1 cut(s) 810
Csp6I GTAC 7 cut(s) 130, 326, 1040, 1158, 1382, 1647, 1986
CviQI GTAC 7 cut(s) 130, 326, 1040, 1158, 1382, 1647, 1986
DdeI CTNAG 5 cut(s) 503, 738, 999, 1035, 1633
DpnI GATC 4 cut(s) 1483, 1593, 1623, 1785
DpnII GATC 4 cut(s) 1481, 1591, 1621, 1783
DraI TTTAAA 1 cut(s) 1863
EaeI YGGCCR 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 1968
Eco31I GGTCTC 1 cut(s) 1417
Eco32I GATATC 1 cut(s) 780
Eco47I GGWCC 2 cut(s) 796, 1711
Eco57I CTGAAG 6 cut(s) 146, 539, 561, 569, 1242, 1816
EcoNI CCTNNNNNAGG 1 cut(s) 1719
EcoO109I RGGNCCY 1 cut(s) 895
EcoRII CCWGG 3 cut(s) 93, 411, 1426
EcoRV GATATC 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 1968
EcoT22I ATGCAT 3 cut(s) 692, 1670, 1756
ErhI CCWWGG 1 cut(s) 1968
FalI AAGNNNNNCTT 2 cut(s) 1719, 1751
FaqI GGGAC 5 cut(s) 58, 469, 1165, 1697, 1814
FauI CCCGC 2 cut(s) 266, 1463
FbaI TGATCA 2 cut(s) 1591, 1621
FblI GTMKAC 1 cut(s) 2031
FokI GGATG 6 cut(s) 267, 428, 827, 827, 1521, 1550
FspAI RTGCGCAY 1 cut(s) 1673
FspBI CTAG 6 cut(s) 270, 602, 881, 1155, 1193, 1455
FspI TGCGCA 1 cut(s) 1673
GlaI GCGC 3 cut(s) 381, 1673, 1850
GsaI CCCAGC 2 cut(s) 254, 1454
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 5 cut(s) 26, 398, 896, 1136, 1703
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 810
HhaI GCGC 3 cut(s) 382, 1674, 1851
Hin6I GCGC 3 cut(s) 380, 1672, 1849
HinP1I GCGC 3 cut(s) 380, 1672, 1849
HindIII AAGCTT 4 cut(s) 423, 505, 551, 860
HinfI GANTC 9 cut(s) 63, 598, 708, 932, 997, 1143, 1319, 1446, 2093
HpaII CCGG 1 cut(s) 200
HphI GGTGA 5 cut(s) 189, 206, 910, 1241, 1631
Hpy166II GTNNAC 3 cut(s) 102, 1647, 2032
Hpy188I TCNGA 9 cut(s) 159, 515, 549, 681, 754, 1222, 1486, 1835, 2098
Hpy8I GTNNAC 3 cut(s) 102, 1647, 2032
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 8 cut(s) 289, 710, 854, 870, 1068, 1131, 1220, 1411
HpyCH4III ACNGT 3 cut(s) 460, 1313, 1894
HpyCH4IV ACGT 2 cut(s) 937, 1240
HpyF3I CTNAG 5 cut(s) 503, 738, 999, 1035, 1633
HpySE526I ACGT 2 cut(s) 937, 1240
HspAI GCGC 3 cut(s) 380, 1672, 1849
Ksp22I TGATCA 2 cut(s) 1591, 1621
Kzo9I GATC 4 cut(s) 1481, 1591, 1621, 1783
LmnI GCTCC 5 cut(s) 408, 559, 617, 682, 1557
LweI GCATC 6 cut(s) 289, 364, 724, 745, 1954, 2038
MaeI CTAG 6 cut(s) 270, 602, 881, 1155, 1193, 1455
MaeII ACGT 2 cut(s) 937, 1240
MaeIII GTNAC 3 cut(s) 195, 610, 1459
MalI GATC 4 cut(s) 1483, 1593, 1623, 1785
MbiI CCGCTC 1 cut(s) 1560
MboI GATC 4 cut(s) 1481, 1591, 1621, 1783
MfeI CAATTG 1 cut(s) 1595
MlsI TGGCCA 1 cut(s) 1136
MluNI TGGCCA 1 cut(s) 1136
MlyI GAGTC 3 cut(s) 57, 991, 1328
Mox20I TGGCCA 1 cut(s) 1136
Mph1103I ATGCAT 3 cut(s) 692, 1670, 1756
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 8 cut(s) 224, 534, 1245, 1614, 1788, 1862, 2025, 2055
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 1136
MspA1I CMGCKG 4 cut(s) 250, 1163, 1706, 2045
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 95, 413, 1428
MunI CAATTG 1 cut(s) 1595
Mva1269I GAATGC 3 cut(s) 330, 1901, 1979
MvaI CCWGG 3 cut(s) 95, 413, 1428
MvnI CGCG 2 cut(s) 382, 1851
NdeII GATC 4 cut(s) 1481, 1591, 1621, 1783
NheI GCTAGC 1 cut(s) 269
NlaIV GGNNCC 2 cut(s) 410, 1713
NmuCI GTSAC 1 cut(s) 195
NsbI TGCGCA 1 cut(s) 1673
NsiI ATGCAT 3 cut(s) 692, 1670, 1756
NspI RCATGY 4 cut(s) 1395, 1672, 1754, 1886
NspV TTCGAA 1 cut(s) 2076
PaeI GCATGC 1 cut(s) 1672
PagI TCATGA 2 cut(s) 1180, 1780
PctI GAATGC 3 cut(s) 330, 1901, 1979
PfeI GAWTC 6 cut(s) 598, 708, 932, 1143, 1446, 2093
PleI GAGTC 3 cut(s) 57, 991, 1327
PpsI GAGTC 3 cut(s) 57, 991, 1327
Psp6I CCWGG 3 cut(s) 93, 411, 1426
PspFI CCCAGC 2 cut(s) 250, 1450
PspGI CCWGG 3 cut(s) 93, 411, 1426
PspN4I GGNNCC 2 cut(s) 410, 1713
PspPI GGNCC 4 cut(s) 397, 796, 895, 1711
PstNI CAGNNNCTG 2 cut(s) 1166, 2096
PvuII CAGCTG 2 cut(s) 250, 2045
RsaI GTAC 7 cut(s) 131, 327, 1041, 1159, 1383, 1648, 1987
RsaNI GTAC 7 cut(s) 130, 326, 1040, 1158, 1382, 1647, 1986
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 8 cut(s) 224, 534, 1245, 1614, 1788, 1862, 2025, 2055
Sau3AI GATC 4 cut(s) 1481, 1591, 1621, 1783
Sau96I GGNCC 4 cut(s) 397, 796, 895, 1711
SchI GAGTC 3 cut(s) 57, 991, 1328
ScrFI CCNGG 3 cut(s) 95, 413, 1428
SfaNI GCATC 6 cut(s) 289, 364, 724, 745, 1954, 2038
SfuI TTCGAA 1 cut(s) 2076
SinI GGWCC 2 cut(s) 796, 1711
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SpeI ACTAGT 1 cut(s) 1154
SphI GCATGC 1 cut(s) 1672
SsiI CCGC 9 cut(s) 5, 8, 110, 273, 1163, 1259, 1470, 1560, 1704
SspMI CTAG 6 cut(s) 270, 602, 881, 1155, 1193, 1455
StyD4I CCNGG 3 cut(s) 93, 411, 1426
StyI CCWWGG 1 cut(s) 1968
TaaI ACNGT 3 cut(s) 460, 1313, 1894
TaiI ACGT 2 cut(s) 940, 1243
TaqI TCGA 4 cut(s) 259, 366, 1322, 2076
TatI WGTACW 4 cut(s) 129, 1157, 1381, 1646
TauI GCSGC 5 cut(s) 8, 11, 113, 1166, 1706
TfiI GAWTC 6 cut(s) 598, 708, 932, 1143, 1446, 2093
Tru1I TTAA 8 cut(s) 224, 534, 1245, 1614, 1788, 1862, 2025, 2055
Tru9I TTAA 8 cut(s) 224, 534, 1245, 1614, 1788, 1862, 2025, 2055
TscAI CASTG 4 cut(s) 1007, 1318, 1359, 1930
TseFI GTSAC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 5 cut(s) 98, 885, 1050, 1197, 1653
TspGWI ACGGA 2 cut(s) 939, 1973
TspRI CASTG 4 cut(s) 1007, 1318, 1359, 1930
VpaK11BI GGWCC 2 cut(s) 796, 1711
XagI CCTNNNNNAGG 1 cut(s) 1719
XapI RAATTY 6 cut(s) 182, 497, 623, 833, 1487, 1949
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 4 cut(s) 1395, 1672, 1754, 1886
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XmiI GTMKAC 1 cut(s) 2031
XspI CTAG 6 cut(s) 270, 602, 881, 1155, 1193, 1455
Zsp2I ATGCAT 3 cut(s) 692, 1670, 1756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.