RchiOBHm_Chr1g0366631
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
57115240 .. 57115530
291 bp
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UTR
Exon/CDS
Intron
PRQ59116

Sequence Viewer

Length: 291 bp
ATGGTTCTCGGAAAGATGCGAGACATAGCTGAGGCCTACCTTGGCTCAACAGTAAGAAATGCAGTTATTACTGTCCCTGCTTACTTCAATGATTCACAGCGTCAGGCTACAAAAGATGCTGGTGGCATTGCTGGCCTAAATATGATGCGGATTATAAATGAACCAACTGCCGCAGCCATTGCTTATGGCCTTGACAAGAAGGCCAGTGGGTATAGTAGGAGAAATGTGATGATATTTGATTTAGGTGGTGGTACCACTACTAGCAAAACAACAATTACCCACGGATTTTAA
Functional Annotation

Protein Analysis

96

Amino Acids

10.23

Weight (kDa)

9.69

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 87 9.9e-43 Hsp70 protein
MreB_Mbl PF06723 19 - 87 1.6e-07 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0028871)

Species Orthologous Gene IDs
malus_domestica MD07G1116300.v1.1
rosa_chinensis RchiOBHm_Chr1g0366631

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AciI CCGC 2 cut(s) 148, 171
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 15
AoxI GGCC 4 cut(s) 33, 133, 187, 201
ApeKI GCWGC 1 cut(s) 173
Asp718I GGTACC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 171, 174
BlsI GCNGC 2 cut(s) 172, 175
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 3 cut(s) 6, 106, 135
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 40, 280
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 126, 177
BseDI CCNNGG 2 cut(s) 40, 280
BseMI GCAATG 2 cut(s) 126, 177
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 185
BshFI GGCC 4 cut(s) 35, 135, 189, 203
BshNI GGYRCC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 4 cut(s) 35, 135, 189, 203
BspACI CCGC 2 cut(s) 148, 171
BspANI GGCC 4 cut(s) 35, 135, 189, 203
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 126, 177
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 40, 280
BssT1I CCWWGG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 52, 73
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 132, 179
BstV1I GCAGC 1 cut(s) 185
BsuRI GGCC 4 cut(s) 35, 135, 189, 203
BtgI CCRYGG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 133
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 252
CviJI RGCY 8 cut(s) 29, 35, 45, 107, 135, 176, 189, 203
CviKI_1 RGCY 8 cut(s) 29, 35, 45, 107, 135, 176, 189, 203
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaiI YATR 5 cut(s) 26, 143, 155, 186, 213
FaqI GGGAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 171, 174
Fsp4HI GCNGC 2 cut(s) 171, 174
FspBI CTAG 1 cut(s) 261
GluI GCNGC 2 cut(s) 171, 174
HaeIII GGCC 4 cut(s) 35, 135, 189, 203
HgaI GACGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 52, 73
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 179
HpyF3I CTNAG 1 cut(s) 30
KpnI GGTACC 1 cut(s) 255
LpnPI CCDG 5 cut(s) 89, 90, 105, 117, 217
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 3 cut(s) 6, 106, 135
MaeI CTAG 1 cut(s) 261
MluCI AATT 1 cut(s) 273
MnlI CCTC 1 cut(s) 25
MseI TTAA 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 132, 179
NlaIV GGNNCC 1 cut(s) 253
PceI AGGCCT 1 cut(s) 35
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 172, 175
PsiI TTATAA 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 253
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 289
SatI GCNGC 2 cut(s) 171, 174
SetI ASST 3 cut(s) 31, 42, 247
SfaNI GCATC 3 cut(s) 6, 106, 135
Sse9I AATT 1 cut(s) 273
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 2 cut(s) 148, 171
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 35
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 52, 73
TasI AATT 1 cut(s) 273
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 211
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.