RchiOBHm_Chr1g0367421

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029570
Physical Location & Seq
Forward (+)
57718607 .. 57721205
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59188

Sequence Viewer

Length: 864 bp
ATGGTAATGCTTGCCAATGCTGAGCTCTTCTTCAAAGTACCTCCAACTCCGCCGAAAGATGGTGAGGTTTTGCTAAAAAGATTTCTCTTTAATGAACTGAAAACAGCTACCTGGAACTTTCATCGTTATAATAAGCTCGGTGAAGGTGGTTTTGGTTCTGTTTTCAAGGGGTGGGTTGATGACAGTTCATCAACAGCTGCCAAGCCCGGTACTGGCATGTTAATTGCTGTGAAGAGGATTAACCAAGAAGGTTTACAGGGTCACAAGGAATGGTTGACAGAAATTTACTACCTAGGAAAGCTGCGTCATCCAAATCTTGTGACATTGTATGATCGCCGGCTTCTGGTGTATGAATTCATGGCTCGTGGTAGCTTGGATAGTCATCTATATGGAAGTGGTACTGAGGAAAAAGTGATCCATCAGGACTTCAAAAGCTCTAATATCCTACTGGATTCAGACTACAATGCCAAACTCTCTGATTTTGGTTTTGCTAAGGATGGACCAATAGGTGATAGAAGCCATGTCTCAACAAGGGTGATGGGGACATATGGGTATGCAGCTCCCGAGTATATTGCTACAGGTCATTTAACCGGAAAGAATGATGTGCATGGTTTTAGAGTTGTTATGCTCGAATTGTTGTCTGGAAGACAAGTTCTGGACAGGAGCCTGCCAACCAAGGAAAAGAATCAAGTTGAATGGGCAAAACCATACCTTACCAGCAAACACAGAGTTCTCAAAATTTTTGTTGCTCGTATTAAAGGCCAGTATTATGTGTCTGCAGCTCATAAACCAGCTAACCTTGCAAATCAATGCTTATTAATAGACCACAAGTTAAGGCCAAACATGAATGAGGTAGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

287

Amino Acids

32.43

Weight (kDa)

9.4

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 130 5.6e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 42 - 130 3.5e-10 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 135 - 286 4.1e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 136 - 286 1e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029570)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0367341 RchiOBHm_Chr1g0367421

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AciI CCGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 3 cut(s) 282, 353, 738
AfaI GTAC 3 cut(s) 39, 211, 400
AfiI CCNNNNNNNGG 3 cut(s) 59, 212, 343
AgsI TTSAA 4 cut(s) 34, 166, 430, 695
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 1 cut(s) 409
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 2 cut(s) 760, 836
ApeKI GCWGC 4 cut(s) 197, 301, 557, 779
ApoI RAATTY 3 cut(s) 282, 353, 738
AseI ATTAAT 1 cut(s) 818
AspA2I CCTAGG 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 4 cut(s) 74, 152, 521, 547
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 500
AvrII CCTAGG 1 cut(s) 292
BanII GRGCYC 1 cut(s) 27
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 4 cut(s) 184, 288, 569, 791
BccI CCATC 4 cut(s) 53, 426, 491, 532
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 576, 777
BisI GCNGC 4 cut(s) 198, 302, 558, 780
BlnI CCTAGG 1 cut(s) 292
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 4 cut(s) 199, 303, 559, 781
Bme1390I CCNGG 2 cut(s) 112, 207
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 2 cut(s) 112, 207
BpiI GAAGAC 1 cut(s) 652
Bpu10I CCTNAGC 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 292, 675
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 212, 343
Bse118I RCCGGY 1 cut(s) 336
Bse1I ACTGG 3 cut(s) 217, 453, 763
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 292, 675
BseGI GGATG 2 cut(s) 307, 502
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 59, 212, 343
BseMII CTCAG 2 cut(s) 12, 393
BseNI ACTGG 3 cut(s) 217, 453, 763
BseXI GCAGC 4 cut(s) 184, 288, 569, 791
BshFI GGCC 2 cut(s) 762, 838
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 3 cut(s) 207, 337, 591
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 3 cut(s) 59, 212, 343
BsmAI GTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 556
BsnI GGCC 2 cut(s) 762, 838
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 331, 414
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 762, 838
BspCNI CTCAG 2 cut(s) 13, 394
BspLI GGNNCC 1 cut(s) 665
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 1 cut(s) 409
BspQI GCTCTTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 336
BsrI ACTGG 3 cut(s) 217, 453, 763
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 292, 675
BssMI GATC 2 cut(s) 331, 414
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 292, 675
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 32, 227
BstC8I GCNNGC 3 cut(s) 12, 338, 668
BstDEI CTNAG 3 cut(s) 21, 402, 492
BstF5I GGATG 2 cut(s) 307, 502
BstKTI GATC 2 cut(s) 334, 417
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 2 cut(s) 331, 414
BstMWI GCNNNNNNNGC 1 cut(s) 800
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 2 cut(s) 110, 205
BstSFI CTRYAG 2 cut(s) 576, 777
BstV1I GCAGC 4 cut(s) 184, 288, 569, 791
BstV2I GAAGAC 1 cut(s) 652
BsuRI GGCC 2 cut(s) 762, 838
BtsCI GGATG 2 cut(s) 307, 502
Cac8I GCNNGC 3 cut(s) 12, 338, 668
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 38, 210, 399
CviAII CATG 5 cut(s) 217, 358, 521, 608, 844
CviQI GTAC 3 cut(s) 38, 210, 399
DdeI CTNAG 3 cut(s) 21, 402, 492
DpnI GATC 2 cut(s) 333, 416
DpnII GATC 2 cut(s) 331, 414
Eam1104I CTCTTC 2 cut(s) 32, 227
EarI CTCTTC 2 cut(s) 32, 227
EciI GGCGGA 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 292, 675
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 292, 675
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 2 cut(s) 292, 675
FaeI CATG 5 cut(s) 220, 361, 524, 611, 847
FaqI GGGAC 1 cut(s) 556
FatI CATG 5 cut(s) 216, 357, 520, 607, 843
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 4 cut(s) 198, 302, 558, 780
FokI GGATG 2 cut(s) 294, 509
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 4 cut(s) 198, 302, 558, 780
FspBI CTAG 1 cut(s) 293
GluI GCNGC 4 cut(s) 198, 302, 558, 780
HaeIII GGCC 2 cut(s) 762, 838
HapII CCGG 3 cut(s) 207, 337, 591
HgaI GACGC 1 cut(s) 293
Hin1II CATG 5 cut(s) 220, 361, 524, 611, 847
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 2 cut(s) 452, 685
HpaII CCGG 3 cut(s) 207, 337, 591
HphI GGTGA 4 cut(s) 74, 152, 521, 547
Hpy166II GTNNAC 2 cut(s) 254, 276
Hpy188I TCNGA 2 cut(s) 457, 478
Hpy188III TCNNGA 4 cut(s) 422, 563, 642, 656
Hpy8I GTNNAC 2 cut(s) 254, 276
HpyAV CCTTC 2 cut(s) 137, 242
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 557, 607, 779, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 800
HpyF3I CTNAG 3 cut(s) 21, 402, 492
Hsp92II CATG 5 cut(s) 220, 361, 524, 611, 847
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 331, 414
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 565, 663
Lsp1109I GCAGC 4 cut(s) 184, 288, 569, 791
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 260, 319
MalI GATC 2 cut(s) 333, 416
MboI GATC 2 cut(s) 331, 414
MboII GAAGA 4 cut(s) 19, 22, 244, 657
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 6 cut(s) 222, 282, 353, 632, 738, 859
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 51, 58, 228, 397, 844
MroNI GCCGGC 1 cut(s) 336
MseI TTAA 8 cut(s) 90, 221, 240, 587, 756, 818, 833, 862
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 3 cut(s) 207, 337, 591
MspR9I CCNGG 2 cut(s) 112, 207
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 800
NaeI GCCGGC 1 cut(s) 338
NciI CCSGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 331, 414
NgoMIV GCCGGC 1 cut(s) 336
NlaIII CATG 5 cut(s) 220, 361, 524, 611, 847
NlaIV GGNNCC 1 cut(s) 665
NmuCI GTSAC 2 cut(s) 260, 319
NspI RCATGY 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 32
PdiI GCCGGC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 452, 685
PkrI GCNGC 4 cut(s) 199, 303, 559, 781
PshBI ATTAAT 1 cut(s) 818
PsiI TTATAA 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 1 cut(s) 500
PstI CTGCAG 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 39, 211, 400
RsaNI GTAC 3 cut(s) 38, 210, 399
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 8 cut(s) 90, 221, 240, 587, 756, 818, 833, 862
SatI GCNGC 4 cut(s) 198, 302, 558, 780
Sau3AI GATC 2 cut(s) 331, 414
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 112, 207
SduI GDGCHC 1 cut(s) 27
SfcI CTRYAG 2 cut(s) 576, 777
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 6 cut(s) 222, 282, 353, 632, 738, 859
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 110, 205
StyI CCWWGG 2 cut(s) 292, 675
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 630
TasI AATT 6 cut(s) 222, 282, 353, 632, 738, 859
TfiI GAWTC 2 cut(s) 452, 685
Tru1I TTAA 8 cut(s) 90, 221, 240, 587, 756, 818, 833, 862
Tru9I TTAA 8 cut(s) 90, 221, 240, 587, 756, 818, 833, 862
TseFI GTSAC 2 cut(s) 260, 319
TseI GCWGC 4 cut(s) 197, 301, 557, 779
Tsp45I GTSAC 2 cut(s) 260, 319
TspDTI ATGAA 6 cut(s) 108, 110, 177, 346, 366, 860
VpaK11BI GGWCC 1 cut(s) 500
VspI ATTAAT 1 cut(s) 818
XapI RAATTY 3 cut(s) 282, 353, 738
XceI RCATGY 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 292
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.