RchiOBHm_Chr1g0367631

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029561
Physical Location & Seq
Forward (+)
57970596 .. 57971360
765 bp
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UTR
Exon/CDS
Intron
PRQ59205

Sequence Viewer

Length: 342 bp
ATGGGGACATATGGATATGCAGCTCCAGAGTCATTTAACCAGCAAAATGATGTGTATGGTTTTGGAGTTGTTATGCTCGAATTGTTGACAGGAAAACCAGTTCTTGACACTAGCCGGCCAACCAGGGAACAAGATCTAGTTGAATGGGCCAAACCATACCTTGCCAGCAAACGTGGAGTTCTTAAAATTTTTGATGCTCGTATTAAAGGCCAGTATTCTGTGGCTGCAGCTCGTAAAGCGGCTAACCTTGCAAATCAATGCTTATCAGCAGAACCCGAGTTGAGGCCAAAAATGAATGAGGTGGTAAAAGAATTAGAGCATGCAGCTCCAGGAATCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.5

Weight (kDa)

8.73

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 103 7.3e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 105 3.1e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029561)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0367631
rosa_samantha Rh1BG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 2 cut(s) 122, 328
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 3 cut(s) 23, 230, 326
AluI AGCT 3 cut(s) 23, 230, 326
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 4 cut(s) 116, 147, 208, 284
ApeKI GCWGC 4 cut(s) 20, 224, 227, 323
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 275
BbvI GCAGC 4 cut(s) 32, 211, 239, 335
BciT130I CCWGG 2 cut(s) 124, 330
BfaI CTAG 2 cut(s) 111, 137
BfmI CTRYAG 1 cut(s) 225
BglII AGATCT 1 cut(s) 133
BisI GCNGC 5 cut(s) 21, 225, 228, 240, 324
BlsI GCNGC 5 cut(s) 22, 226, 229, 241, 325
Bme1390I CCNGG 2 cut(s) 124, 330
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 124, 330
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 2 cut(s) 9, 312
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 98, 211
BseBI CCWGG 2 cut(s) 124, 330
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 98, 211
BseXI GCAGC 4 cut(s) 32, 211, 239, 335
BshFI GGCC 4 cut(s) 118, 149, 210, 286
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 4 cut(s) 118, 149, 210, 286
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 239
BspANI GGCC 4 cut(s) 118, 149, 210, 286
BspMAI CTGCAG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 2 cut(s) 98, 211
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 2 cut(s) 124, 330
BstC8I GCNNGC 3 cut(s) 116, 166, 321
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 236, 248
BstNI CCWGG 2 cut(s) 124, 330
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 122, 328
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 32, 211, 239, 335
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 4 cut(s) 118, 149, 210, 286
Cac8I GCNNGC 3 cut(s) 116, 166, 321
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 147
CviAII CATG 1 cut(s) 320
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 122, 328
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 10, 12, 18, 57, 74, 157, 321
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 319
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 5 cut(s) 21, 225, 228, 240, 324
Fsp4HI GCNGC 5 cut(s) 21, 225, 228, 240, 324
FspBI CTAG 2 cut(s) 111, 137
GluI GCNGC 5 cut(s) 21, 225, 228, 240, 324
GsuI CTGGAG 2 cut(s) 9, 312
HaeIII GGCC 4 cut(s) 118, 149, 210, 286
HapII CCGG 1 cut(s) 115
Hin1II CATG 1 cut(s) 323
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 2 cut(s) 29, 333
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 26, 104
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 20, 227, 251, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 248
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 323
KroI GCCGGC 1 cut(s) 114
KroNI GCCGGC 1 cut(s) 116
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 28, 331
Lsp1109I GCAGC 4 cut(s) 32, 211, 239, 335
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 111, 137
MaeII ACGT 1 cut(s) 172
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MflI RGATCY 1 cut(s) 133
MluCI AATT 3 cut(s) 80, 186, 311
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 2 cut(s) 276, 292
MroNI GCCGGC 1 cut(s) 114
MseI TTAA 3 cut(s) 36, 183, 204
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 124, 330
MvaI CCWGG 2 cut(s) 124, 330
MwoI GCNNNNNNNGC 2 cut(s) 236, 248
NaeI GCCGGC 1 cut(s) 116
NdeI CATATG 1 cut(s) 10
NdeII GATC 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 114
NlaIII CATG 1 cut(s) 323
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PdiI GCCGGC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 5 cut(s) 22, 226, 229, 241, 325
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 122, 328
PspGI CCWGG 2 cut(s) 122, 328
PspPI GGNCC 1 cut(s) 147
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 3 cut(s) 36, 183, 204
SatI GCNGC 5 cut(s) 21, 225, 228, 240, 324
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 124, 330
SetI ASST 8 cut(s) 25, 162, 175, 232, 249, 303, 328, 341
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 225
SphI GCATGC 1 cut(s) 323
Sse9I AATT 3 cut(s) 80, 186, 311
SsiI CCGC 1 cut(s) 239
SspMI CTAG 2 cut(s) 111, 137
StyD4I CCNGG 2 cut(s) 122, 328
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 80, 186, 311
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 3 cut(s) 36, 183, 204
Tru9I TTAA 3 cut(s) 36, 183, 204
TseI GCWGC 4 cut(s) 20, 224, 227, 323
TspDTI ATGAA 1 cut(s) 308
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 323
XspI CTAG 2 cut(s) 111, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.