Rh1BG304000

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0029561
Physical Location & Seq
Forward (+)
44025838 .. 44026233
396 bp
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UTR
Exon/CDS
Intron
Rh1BG304000.1

Sequence Viewer

Length: 396 bp
ATGCTCGAATTGTTGACTGGAAAACCAGTTCTTGACACTAGCCGGCCAACCAGGGAACAAGATCTAGTTGAATGGGCCAAACCATACCTTGCCAGCAAACGCGGAGTTCTTAAAATTTTTGATGCTCGTATTAAAGGCCAGTATTCTGTGGCTGCAGCTCGTAAAGCGGCTAACCTTGCAAATCAATGCTTATCAGCAGAACCCGAGTTGAGGCCAAACATGAATGAGGTGGTAAAAGAATTAGAGCAGCTTCAGGAATCAGATGACATTGAGGGCGCAGGAATCTCTTATAGCGAGCCTTGCCAATCTCCTTATTCCAATTCAAGCAGTCTCAAATCAAGCGGGAGAAGTTGGATCAGCTTCAGGTCATCTGCTTCTCGCAGCTACATAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

131

Amino Acids

14.46

Weight (kDa)

7.72

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029561)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0367631
rosa_samantha Rh1BG304000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 3 cut(s) 102, 167, 342
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 114
AcuI CTGAAG 2 cut(s) 236, 346
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 2 cut(s) 71, 324
AjnI CCWGG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 4 cut(s) 158, 250, 360, 384
AluI AGCT 4 cut(s) 158, 250, 360, 384
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 4 cut(s) 44, 75, 136, 212
ApeKI GCWGC 4 cut(s) 152, 155, 247, 381
ApoI RAATTY 1 cut(s) 114
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 203
BbvI GCAGC 3 cut(s) 139, 167, 259
BciT130I CCWGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 39, 65
BfmI CTRYAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 61
BisI GCNGC 5 cut(s) 153, 156, 168, 248, 382
BlsI GCNGC 5 cut(s) 154, 157, 169, 249, 383
Bme1390I CCNGG 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 22, 26, 139
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 3 cut(s) 22, 26, 139
BseXI GCAGC 3 cut(s) 139, 167, 259
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 4 cut(s) 46, 77, 138, 214
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 4 cut(s) 46, 77, 138, 214
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 2 cut(s) 61, 354
BspACI CCGC 3 cut(s) 102, 167, 342
BspANI GGCC 4 cut(s) 46, 77, 138, 214
BspFNI CGCG 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 22, 26, 139
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 61, 354
Bst2UI CCWGG 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 44, 94, 296
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 2 cut(s) 64, 357
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 2 cut(s) 61, 354
BstMWI GCNNNNNNNGC 3 cut(s) 164, 176, 300
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 139, 167, 259
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 4 cut(s) 46, 77, 138, 214
Cac8I GCNNGC 3 cut(s) 44, 94, 296
CfoI GCGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 75
CviAII CATG 1 cut(s) 220
DpnI GATC 2 cut(s) 63, 356
DpnII GATC 2 cut(s) 61, 354
EaeI YGGCCR 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 236, 346
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 223
FaiI YATR 4 cut(s) 85, 221, 291, 389
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 335
Fnu4HI GCNGC 5 cut(s) 153, 156, 168, 248, 382
Fsp4HI GCNGC 5 cut(s) 153, 156, 168, 248, 382
FspBI CTAG 2 cut(s) 39, 65
GlaI GCGC 1 cut(s) 277
GluI GCNGC 5 cut(s) 153, 156, 168, 248, 382
HaeIII GGCC 4 cut(s) 46, 77, 138, 214
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 257, 282
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 32, 254
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 155, 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 176, 300
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 276
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 61, 354
Lsp1109I GCAGC 3 cut(s) 139, 167, 259
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 39, 65
MalI GATC 2 cut(s) 63, 356
MboI GATC 2 cut(s) 61, 354
MflI RGATCY 1 cut(s) 61
MluCI AATT 4 cut(s) 8, 114, 239, 319
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 3 cut(s) 204, 220, 265
MroNI GCCGGC 1 cut(s) 42
MseI TTAA 2 cut(s) 111, 132
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 164, 176, 300
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 2 cut(s) 61, 354
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 257, 282
PkrI GCNGC 5 cut(s) 154, 157, 169, 249, 383
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspPI GGNCC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 61
SaqAI TTAA 2 cut(s) 111, 132
SatI GCNGC 5 cut(s) 153, 156, 168, 248, 382
Sau3AI GATC 2 cut(s) 61, 354
Sau96I GGNCC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 52
SetI ASST 8 cut(s) 90, 160, 177, 231, 252, 362, 368, 386
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 4 cut(s) 8, 114, 239, 319
SsiI CCGC 3 cut(s) 102, 167, 342
SspMI CTAG 2 cut(s) 39, 65
StyD4I CCNGG 1 cut(s) 50
TaqI TCGA 1 cut(s) 6
TasI AATT 4 cut(s) 8, 114, 239, 319
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 257, 282
Tru1I TTAA 2 cut(s) 111, 132
Tru9I TTAA 2 cut(s) 111, 132
TseI GCWGC 4 cut(s) 152, 155, 247, 381
TspDTI ATGAA 1 cut(s) 236
XapI RAATTY 1 cut(s) 114
XspI CTAG 2 cut(s) 39, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.