RchiOBHm_Chr1g0367641

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029537
Physical Location & Seq
Forward (+)
57971618 .. 57973771
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59206

Sequence Viewer

Length: 546 bp
ATGAACCTTTCCACCACTCACGTCGTACAAACCGGAACTTGCAGCAGTTCGCCCCCGACTATAGTTAGCTTACTGAATGAGCTACAGTGCTCTCAGTTGCGATCAGAAGCAGTAACTTGTGGTGGGATTCGAACAAGCGTGAAGGGGTACCTTATTGCGAAACGTCTCAGTCTGACTGGGGAGATAGATACAGTGCATGAGATGAATGAGATCATCAATACAAATTTCACTGCACTCCAAGCTCACAATGTGCCTTCAACTCCTCAGACAGAGGGTGAAATCTTGTTGAAAAGATTTCTCTTCAATGAACTGAAAATAGCAACCTGGAACTTTCATCCTGATAATATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGTAATTCATCAACAGCTGCCAAGACTGGTAGTGGCATGTTAATTGCTGTGAAGACGATTGACCAAGAAGGTTTCCAGGGCCAAGAGGAATGGTTGGTGAGTTTTACTTGTATCCTTGATCTGCTTACCTGCACCTTCACAATATCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

19.74

Weight (kDa)

5.29

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029537)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0367641
rosa_samantha Rh1AG342900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 530
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 2 cut(s) 27, 149
AgsI TTSAA 3 cut(s) 258, 289, 304
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 323, 468
AluBI AGCT 4 cut(s) 69, 82, 242, 410
AluI AGCT 4 cut(s) 69, 82, 242, 410
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 2 cut(s) 42, 410
ApoI RAATTY 1 cut(s) 223
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 287, 502
AsuII TTCGAA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 54, 397
BccI CCATC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 325, 470
BciVI GTATCC 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 2 cut(s) 60, 83
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 2 cut(s) 43, 411
BlsI GCNGC 2 cut(s) 44, 412
Bme1390I CCNGG 2 cut(s) 325, 470
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 325, 470
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 452
Bpu14I TTCGAA 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 469
BsaWI WCCGGW 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 181, 424
BseBI CCWGG 2 cut(s) 325, 470
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 334
BseMII CTCAG 3 cut(s) 107, 181, 278
BseNI ACTGG 2 cut(s) 181, 424
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 54, 397
BsgI GTGCAG 2 cut(s) 216, 508
BshFI GGCC 1 cut(s) 474
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 101, 210, 511
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 3 cut(s) 106, 180, 277
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 530
BspT104I TTCGAA 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 147
BsrI ACTGG 2 cut(s) 181, 424
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 3 cut(s) 101, 210, 511
Bst2UI CCWGG 2 cut(s) 325, 470
Bst4CI ACNGT 2 cut(s) 87, 193
Bst6I CTCTTC 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 93, 167, 264
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 3 cut(s) 104, 213, 514
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 3 cut(s) 101, 210, 511
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 2 cut(s) 325, 470
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 323, 468
BstSFI CTRYAG 2 cut(s) 60, 83
BstV1I GCAGC 2 cut(s) 54, 397
BstV2I GAAGAC 1 cut(s) 452
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 1 cut(s) 474
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 92, 198, 228
BveI ACCTGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 26, 148
CviAII CATG 2 cut(s) 197, 430
CviJI RGCY 5 cut(s) 69, 82, 242, 410, 474
CviKI_1 RGCY 5 cut(s) 69, 82, 242, 410, 474
CviQI GTAC 2 cut(s) 26, 148
DdeI CTNAG 3 cut(s) 93, 167, 264
DpnI GATC 3 cut(s) 103, 212, 513
DpnII GATC 3 cut(s) 101, 210, 511
DraIII CACNNNGTG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 323, 468
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 200, 433
FaiI YATR 5 cut(s) 62, 198, 347, 372, 431
FatI CATG 2 cut(s) 196, 429
Fnu4HI GCNGC 2 cut(s) 43, 411
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 43, 411
GluI GCNGC 2 cut(s) 43, 411
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 33
Hin1II CATG 2 cut(s) 200, 433
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 33
HphI GGTGA 2 cut(s) 287, 502
Hpy188I TCNGA 3 cut(s) 106, 174, 267
Hpy188III TCNNGA 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 136, 264, 455, 538
HpyCH4III ACNGT 2 cut(s) 87, 193
HpyCH4IV ACGT 2 cut(s) 21, 163
HpyCH4V TGCA 4 cut(s) 42, 196, 233, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 93, 167, 264
HpySE526I ACGT 2 cut(s) 21, 163
Hsp92II CATG 2 cut(s) 200, 433
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 101, 210, 511
LpnPI CCDG 9 cut(s) 46, 162, 310, 337, 351, 405, 455, 482, 535
Lsp1109I GCAGC 2 cut(s) 54, 397
MaeII ACGT 2 cut(s) 21, 163
MaeIII GTNAC 1 cut(s) 112
MalI GATC 3 cut(s) 103, 212, 513
MboI GATC 3 cut(s) 101, 210, 511
MboII GAAGA 2 cut(s) 292, 457
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 223, 397, 435
MnlI CCTC 3 cut(s) 265, 273, 472
MseI TTAA 3 cut(s) 378, 434, 544
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 2 cut(s) 325, 470
MvaI CCWGG 2 cut(s) 325, 470
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 3 cut(s) 101, 210, 511
NlaIII CATG 2 cut(s) 200, 433
NlaIV GGNNCC 1 cut(s) 149
NspI RCATGY 1 cut(s) 433
NspV TTCGAA 1 cut(s) 130
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 44, 412
Psp6I CCWGG 2 cut(s) 323, 468
PspGI CCWGG 2 cut(s) 323, 468
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 27, 149
RsaNI GTAC 2 cut(s) 26, 148
SaqAI TTAA 3 cut(s) 378, 434, 544
SatI GCNGC 2 cut(s) 43, 411
Sau3AI GATC 3 cut(s) 101, 210, 511
Sau96I GGNCC 1 cut(s) 472
ScrFI CCNGG 2 cut(s) 325, 470
SduI GDGCHC 1 cut(s) 92
SfcI CTRYAG 2 cut(s) 60, 83
SfuI TTCGAA 1 cut(s) 130
Sse9I AATT 3 cut(s) 223, 397, 435
StyD4I CCNGG 2 cut(s) 323, 468
TaaI ACNGT 2 cut(s) 87, 193
TaiI ACGT 2 cut(s) 24, 166
TaqI TCGA 1 cut(s) 130
TasI AATT 3 cut(s) 223, 397, 435
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 3 cut(s) 378, 434, 544
Tru9I TTAA 3 cut(s) 378, 434, 544
TscAI CASTG 3 cut(s) 92, 198, 235
TseI GCWGC 2 cut(s) 42, 410
TspDTI ATGAA 5 cut(s) 17, 218, 321, 323, 390
TspRI CASTG 3 cut(s) 92, 198, 235
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.