Rh1AG342900

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0029537
Physical Location & Seq
Forward (+)
57919452 .. 57920348
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG342900.1

Sequence Viewer

Length: 432 bp
ATGAGTGGTGGGATTCGAACAAGCGTGAAGGGGTACCTTATTGCGAAACGTCTCAGTCTGACTGGGGAGATAGATACAGTGCATGAGATGAATGAGATCATCAACACAAATTTCACTGCACTCCAAGCTCACAATGTGCCTTCAACTCCTCAGACAGAGGGTGAAATCTTGTTGAAAAGATTTCTCTTCAATGAACTGAAAATAGCAACCTGGAACTTTCATCCTGATAATATGGTGGGTGTAGGTGGTTTTGGTTATGTTTTTAAGGGGTGGGTTGATGGTAATTCATCAACAGCTGCCAAGGCTGGTAGTGGCATGTTAATTGCTGTGAAGATGATTGACCAAGAAGGTTTCCAGGGTCAAGAGGAATGGTTGGTGAGTTTTACTTGTATCCTTGATCTGCTTACCTGCACCTTCACAATATCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

5.26

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029537)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0367641
rosa_samantha Rh1AG342900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 3 cut(s) 144, 175, 190
AjnI CCWGG 2 cut(s) 209, 354
AluBI AGCT 2 cut(s) 128, 296
AluI AGCT 2 cut(s) 128, 296
Alw26I GTCTC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 109
Asp718I GGTACC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 173, 388
AsuII TTCGAA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 211, 356
BciVI GTATCC 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 416
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 211, 356
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 211, 356
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 300, 355
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 211, 356
BseDI CCNNGG 2 cut(s) 300, 355
BseGI GGATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 67, 164
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 283
BsgI GTGCAG 2 cut(s) 102, 394
BshNI GGYRCC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 96, 397
BspCNI CTCAG 2 cut(s) 66, 163
BspLI GGNNCC 1 cut(s) 35
BspMI ACCTGC 1 cut(s) 416
BspT104I TTCGAA 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 300, 355
BssMI GATC 2 cut(s) 96, 397
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 211, 356
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 53, 150
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 99, 400
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 96, 397
BstMWI GCNNNNNNNGC 2 cut(s) 125, 302
BstNI CCWGG 2 cut(s) 211, 356
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 209, 354
BstV1I GCAGC 1 cut(s) 283
BsuI GTATCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 84, 114
BveI ACCTGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 83, 316
CviJI RGCY 3 cut(s) 128, 296, 305
CviKI_1 RGCY 3 cut(s) 128, 296, 305
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 53, 150
DpnI GATC 2 cut(s) 98, 399
DpnII GATC 2 cut(s) 96, 397
DraIII CACNNNGTG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 209, 354
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 86, 319
FaiI YATR 4 cut(s) 84, 233, 258, 317
FatI CATG 2 cut(s) 82, 315
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 86, 319
HinfI GANTC 1 cut(s) 13
HphI GGTGA 2 cut(s) 173, 388
Hpy188I TCNGA 2 cut(s) 60, 153
Hpy188III TCNNGA 2 cut(s) 224, 362
HpyAV CCTTC 4 cut(s) 22, 150, 341, 424
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 82, 119, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 302
HpyF3I CTNAG 2 cut(s) 53, 150
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 86, 319
KpnI GGTACC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 96, 397
LpnPI CCDG 8 cut(s) 48, 196, 223, 237, 291, 341, 368, 421
Lsp1109I GCAGC 1 cut(s) 283
MaeII ACGT 1 cut(s) 49
MalI GATC 2 cut(s) 98, 399
MboI GATC 2 cut(s) 96, 397
MboII GAAGA 2 cut(s) 178, 343
MluCI AATT 3 cut(s) 109, 283, 321
MnlI CCTC 3 cut(s) 151, 159, 358
MseI TTAA 3 cut(s) 264, 320, 430
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 211, 356
MvaI CCWGG 2 cut(s) 211, 356
MwoI GCNNNNNNNGC 2 cut(s) 125, 302
NdeII GATC 2 cut(s) 96, 397
NlaIII CATG 2 cut(s) 86, 319
NlaIV GGNNCC 1 cut(s) 35
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 16
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 209, 354
PspGI CCWGG 2 cut(s) 209, 354
PspN4I GGNNCC 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 3 cut(s) 264, 320, 430
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 96, 397
ScrFI CCNGG 2 cut(s) 211, 356
SetI ASST 9 cut(s) 39, 52, 130, 212, 247, 298, 352, 410, 416
SfuI TTCGAA 1 cut(s) 16
Sse9I AATT 3 cut(s) 109, 283, 321
StyD4I CCNGG 2 cut(s) 209, 354
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 109, 283, 321
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 3 cut(s) 264, 320, 430
Tru9I TTAA 3 cut(s) 264, 320, 430
TscAI CASTG 2 cut(s) 84, 121
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 104, 207, 209, 276
TspRI CASTG 2 cut(s) 84, 121
XapI RAATTY 1 cut(s) 109
XceI RCATGY 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.