RchiOBHm_Chr1g0369711

protein serine/threonine kinase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
59431220 .. 59432418
1199 bp
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UTR
Exon/CDS
Intron
PRQ59394

Sequence Viewer

Length: 426 bp
ATGAATCTCAATATTGTCCTTGAAGGAAAACAATTTTGTGGGCAATGTCCTGGAGGAGATAGGACGGCTGCAATGAATACGCTTAGTAGAGATATACCACCACAGGTTATTGGTCTTTCCTCCTTATCTATCTTACTGAACTTATCACAAAACTCACTAACTGGAAGCCTGCCTACGGGAATGGGTAATCTAAAGAATATCAATGCAATAGACATCTCTGAAAATGGTTTTACCAAAGAAATTCCAGAAACCATTGGAAACTGTCTGAGCCTTGATTTTCTTAACCTTCAAAGGAATCTCTTTCAAGGAATCATACCTTCTTCTATGGTTTCATTGAAAGGTCTTCGGCATTTAGATCTTTCACGGAACAACTTCTCAGGACATATGTCAAAAGACCTACTGACCTACAGAGACTTCCATTCTTGA

Protein Analysis

141

Amino Acids

15.38

Weight (kDa)

6.81

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 46 - 131 6.2e-06 Leucine-rich repeat region
LRR_8 PF13855 71 - 125 3.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029644)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0369711
rosa_multiflora Rmu_sc0016654.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 4 cut(s) 23, 290, 305, 337
AjnI CCWGG 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 406
BglII AGATCT 1 cut(s) 355
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BoxI GACNNNNGTC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 50, 78
BseBI CCWGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 50, 78
BseMII CTCAG 2 cut(s) 257, 390
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 355
BspCNI CTCAG 2 cut(s) 258, 389
BsrDI GCAATG 2 cut(s) 50, 78
BsrI ACTGG 1 cut(s) 166
BssMI GATC 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 83, 266, 376
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 355
BstNI CCWGG 1 cut(s) 51
BstPAI GACNNNNGTC 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 170
CviJI RGCY 3 cut(s) 68, 168, 270
CviKI_1 RGCY 3 cut(s) 68, 168, 270
DdeI CTNAG 3 cut(s) 83, 266, 376
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 49
FaiI YATR 5 cut(s) 95, 314, 326, 384, 386
FauNDI CATATG 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 72
HinfI GANTC 3 cut(s) 4, 295, 309
Hpy188I TCNGA 2 cut(s) 220, 267
Hpy188III TCNNGA 3 cut(s) 245, 378, 423
HpyAV CCTTC 3 cut(s) 17, 296, 327
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 71, 206
HpyF3I CTNAG 3 cut(s) 83, 266, 376
Kzo9I GATC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 36, 63, 89, 147, 182, 258, 363
Lsp1109I GCAGC 1 cut(s) 55
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 312, 335
MflI RGATCY 1 cut(s) 355
MluCI AATT 2 cut(s) 32, 240
MnlI CCTC 2 cut(s) 47, 130
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NdeI CATATG 1 cut(s) 384
NdeII GATC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 3 cut(s) 4, 295, 309
PfoI TCCNGGA 1 cut(s) 49
PkrI GCNGC 1 cut(s) 70
PshAI GACNNNNGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 355
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 51
SetI ASST 6 cut(s) 108, 288, 319, 343, 399, 407
SfcI CTRYAG 1 cut(s) 406
Sse9I AATT 2 cut(s) 32, 240
SspI AATATT 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 263
TasI AATT 2 cut(s) 32, 240
TfiI GAWTC 3 cut(s) 4, 295, 309
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 17, 89, 321
TspGWI ACGGA 1 cut(s) 379
XapI RAATTY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.