Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029688

Physical Location & Seq

Genomic Coordinates Reverse (-)

62971237 .. 62972625

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTTAATAGAGTTCTATTTTTCCTCTCAGCTACCCCATTTTGTTGGGGATTATATGGTTGCATAGGGGTTACATATAAAGGACTTCAACAGTGCATTGAGACTTTGATGGCTAAGGTGGAGCGATTACTTGCTGAACAGAAGGCAACAGATTATAGATCACCAGAAGATCATGGGCCAACAAATGCCTGCACTAGCATTGTAGACTACCTTTCATGTATGCTTGAATCTGCCTTCACAGTACTCGAAGGACTCGAAGGTCTTAACAAGCAAGCATCCCTGACTGAATTGGGAAACCACTTGCACAAAGAATTGCTTAGTCATTGGGAGAGTCACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

113

Amino Acids

12.75

Weight (kDa)

5.42

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec10_HB	PF07393	26 - 110	1.5e-18	Exocyst complex component Sec10-like, alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0375581
rosa_samantha	Rh1AG402400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	89, 227
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	153
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	195
BmcAI	AGTACT	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	158, 169
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	41
BssMI	GATC	2 cut(s)	158, 169
Bst4CI	ACNGT	2 cut(s)	93, 241
BstC8I	GCNNGC	2 cut(s)	190, 273
BstDEI	CTNAG	3 cut(s)	28, 114, 317
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	161, 172
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	158, 169
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	190, 273
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	173, 216
CviJI	RGCY	3 cut(s)	32, 113, 178
CviKI_1	RGCY	3 cut(s)	32, 113, 178
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	28, 114, 317
DpnI	GATC	2 cut(s)	160, 171
DpnII	GATC	2 cut(s)	158, 169
DrdI	GACNNNNNNGTC	1 cut(s)	258
DseDI	GACNNNNNNGTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	176, 219
FaiI	YATR	9 cut(s)	55, 57, 65, 76, 78, 156, 174, 217, 221
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	172, 215
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	1 cut(s)	262
FspBI	CTAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	176, 219
HinfI	GANTC	3 cut(s)	227, 252, 331
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	4 cut(s)	136, 242, 244, 251
HpyCH4III	ACNGT	2 cut(s)	93, 241
HpyCH4V	TGCA	4 cut(s)	63, 96, 192, 304
HpyF3I	CTNAG	3 cut(s)	28, 114, 317
Hsp92II	CATG	2 cut(s)	176, 219
Kzo9I	GATC	2 cut(s)	158, 169
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	177, 202, 293
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	70, 332
MalI	GATC	2 cut(s)	160, 171
MboI	GATC	2 cut(s)	158, 169
MboII	GAAGA	1 cut(s)	179
MluCI	AATT	2 cut(s)	287, 311
MlyI	GAGTC	2 cut(s)	246, 340
MnlI	CCTC	1 cut(s)	35
MseI	TTAA	2 cut(s)	6, 264
NdeII	GATC	2 cut(s)	158, 169
NlaIII	CATG	2 cut(s)	176, 219
NmuCI	GTSAC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	227
PleI	GAGTC	2 cut(s)	246, 339
PpsI	GAGTC	2 cut(s)	246, 339
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	6, 264
Sau3AI	GATC	2 cut(s)	158, 169
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	2 cut(s)	246, 340
SetI	ASST	4 cut(s)	34, 120, 213, 262
SfaNI	GCATC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	287, 311
SspMI	CTAG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	93, 241
TaqI	TCGA	2 cut(s)	246, 255
TasI	AATT	2 cut(s)	287, 311
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	6, 264
Tru9I	TTAA	2 cut(s)	6, 264
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.