Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0029688

Physical Location & Seq

Genomic Coordinates Reverse (-)

62937527 .. 62937826

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG402400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTATATATGTTAAGTGCATAGGGGTTACATATAAAGGACTTCAACAGTGCATTGAGACTTTGATGGCTAAGGTGGAGCGATTACTTGCTGAACAGAAGGCAACAGATTATAGATCACCAGAAGATCATGGGCCAACAAATGCCTGCACTAGCATTGTAGACTACCTTTCATGTATGCTTGAATCTGCCATCAGAGTACTCGAAGGACTCGAAGGTCTTAACAAGCAAGCATCCCTGACTGAATTGGGAAACCACTTGCACAAAGAATTGCTTAGTCATTGGGAGAGTCACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0008150 GO:0009987 GO:0016192 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0046903 GO:0048193 GO:0051179 GO:0051234 GO:0070062 GO:0071944 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec10

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

5.66

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec10_HB	PF07393	12 - 96	2.4e-18	Exocyst complex component Sec10-like, alpha-helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0375581
rosa_samantha	Rh1AG402400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	47, 185
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	111
BccI	CCATC	2 cut(s)	61, 200
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	116, 127
BspANI	GGCC	1 cut(s)	136
BssMI	GATC	2 cut(s)	116, 127
Bst4CI	ACNGT	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	148, 231
BstDEI	CTNAG	2 cut(s)	72, 275
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	119, 130
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	116, 127
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	148, 231
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	2 cut(s)	131, 174
CviJI	RGCY	3 cut(s)	5, 71, 136
CviKI_1	RGCY	3 cut(s)	5, 71, 136
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	72, 275
DpnI	GATC	2 cut(s)	118, 129
DpnII	GATC	2 cut(s)	116, 127
DrdI	GACNNNNNNGTC	1 cut(s)	216
DseDI	GACNNNNNNGTC	1 cut(s)	216
FaeI	CATG	2 cut(s)	134, 177
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	2 cut(s)	130, 173
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	1 cut(s)	220
FspBI	CTAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	134, 177
HinfI	GANTC	3 cut(s)	185, 210, 289
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	94, 200, 209
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	21, 54, 150, 262
HpyF3I	CTNAG	2 cut(s)	72, 275
Hsp92II	CATG	2 cut(s)	134, 177
Kzo9I	GATC	2 cut(s)	116, 127
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	135, 160, 251
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	28, 290
MalI	GATC	2 cut(s)	118, 129
MboI	GATC	2 cut(s)	116, 127
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	2 cut(s)	245, 269
MlyI	GAGTC	2 cut(s)	204, 298
MseI	TTAA	2 cut(s)	15, 222
NdeII	GATC	2 cut(s)	116, 127
NlaIII	CATG	2 cut(s)	134, 177
NmuCI	GTSAC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	185
PleI	GAGTC	2 cut(s)	204, 297
PpsI	GAGTC	2 cut(s)	204, 297
PspPI	GGNCC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	15, 222
Sau3AI	GATC	2 cut(s)	116, 127
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	2 cut(s)	204, 298
SetI	ASST	3 cut(s)	78, 171, 220
SfaNI	GCATC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	245, 269
SspMI	CTAG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	204, 213
TasI	AATT	2 cut(s)	245, 269
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	15, 222
Tru9I	TTAA	2 cut(s)	15, 222
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.