Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029630

Physical Location & Seq

Genomic Coordinates Forward (+)

66358759 .. 66360303

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATAATCAAGAAGAATTTGAAATCGCAAATGCCGAGTCTGAAACGGTGCAAATTCGGTGATTCGGAGGAGGACGAGAGCTCGGGGAGGAAGAAGAGGAGGACTAATGGGTACTACCCGCTCAATTTGCTCGGCGAGGTGGCGGCGGGGATTATTCCGGTGAGCTTCAGGGGCTTGCTCGGGTCGGTTGCTGCCGCAGAGAAGGGAGGAGGGTTTTCGTGGTGCACTGAAGTGTCGTGCTCGCCGCCTCCGGAGGAGGAGGCGGAGTCGAAATCAAAGGTGTGCAAATCCGCAAAAGGAAAGGCTGAGGTTTCGCGGCCGCCGCTGGTGAGGACGTCGAGGGGACGTGTTCAGGTACTGCCTTCTCGGTTTAATGACTCGGTTATTGAGAATTGGAAGAAAGAGAGTAAGACTAGTTTGCGTGGTGATAGTAATGTTGAAGATGAGAAGCCTAGCTTGAAACCCCAGAAAAATGGAAAGAAGCTAGGGAATAATGTGTATGGCTCGAAGAAGTATTCGGGTTTGTGTGAGGAAGAAGAGGAGGAGGAAGAAGAGGAGGAAGATGAAGATGGGTATGTGCCGTTTAAGAGTTATAACATGAGGAAGTACAACTCCAGCTCACGTAGCACACTCACTTCAGTGCATGAGCATTTGGTTGAAGATGACAAGTGTGCGGTTGTGGAGATTATTGAAGAAGAAGAAGAAGAAGATGATTTAGAGGGTGCAGTGAGGATTTCAAATCAGAGGACAGATGGGTTGTATGGACCGGAGGACTTTTATTCCGGTGATATAGTGTGGGCAAAGCCAGGGAAAAAGGAGCCCTTTTGGCCTGCCATTGTTATTGATCCAATGACACAAGCGCCGGAGCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

5.06

Isoelectric Point (pI)

62.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029630)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380891
rosa_multiflora	Rmu_sc0038669.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AatII	GACGTC	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	250
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	2 cut(s)	16, 53
AcuI	CTGAAG	3 cut(s)	151, 249, 621
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	3 cut(s)	113, 357, 608
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	6 cut(s)	22, 440, 460, 659, 692, 738
AhlI	ACTAGT	1 cut(s)	413
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	805
AleI	CACNNNNGTG	2 cut(s)	230, 638
AluBI	AGCT	6 cut(s)	81, 165, 456, 484, 618, 868
AluI	AGCT	6 cut(s)	81, 165, 456, 484, 618, 868
Alw21I	GWGCWC	3 cut(s)	83, 227, 242
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	839
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	2 cut(s)	82, 179
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	2 cut(s)	317, 827
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	16, 53
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AspLEI	GCGC	1 cut(s)	862
AspS9I	GGNCC	1 cut(s)	764
AsuHPI	GGTGA	5 cut(s)	71, 172, 340, 437, 797
AvaI	CYCGRG	2 cut(s)	82, 179
AvaII	GGWCC	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	83, 822
Bbv12I	GWGCWC	3 cut(s)	83, 227, 242
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	563, 746
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	807
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	3 cut(s)	414, 453, 485
BfoI	RGCGCY	1 cut(s)	863
BglI	GCCNNNNNGGC	1 cut(s)	826
BisI	GCNGC	7 cut(s)	144, 192, 195, 245, 317, 320, 323
BlsI	GCNGC	7 cut(s)	145, 193, 196, 246, 318, 321, 324
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	764
BmeT110I	CYCGRG	2 cut(s)	82, 179
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	764
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	1 cut(s)	807
BpmI	CTGGAG	1 cut(s)	598
Bpu10I	CCTNAGC	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	623
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	806
BsaWI	WCCGGW	4 cut(s)	157, 250, 766, 782
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	806
BseMII	CTCAG	1 cut(s)	297
BseRI	GAGGAG	8 cut(s)	83, 112, 222, 269, 272, 554, 557, 569
BseSI	GKGCMC	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	319, 829
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	3 cut(s)	83, 227, 242
BsiHKCI	CYCGRG	2 cut(s)	82, 179
BsiSI	CCGG	5 cut(s)	158, 251, 767, 783, 863
BslFI	GGGAC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	319, 829
BsoBI	CYCGRG	2 cut(s)	82, 179
Bsp1286I	GDGCHC	4 cut(s)	83, 227, 242, 822
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	844
BspANI	GGCC	2 cut(s)	319, 829
BspCNI	CTCAG	1 cut(s)	298
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	819
BspPI	GGATC	1 cut(s)	839
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	806
BssMI	GATC	1 cut(s)	844
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	3 cut(s)	89, 531, 546
BstACI	GRCGYC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	176, 242, 831
BstDEI	CTNAG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	863
BstHHI	GCGC	1 cut(s)	862
BstKTI	GATC	1 cut(s)	847
BstMBI	GATC	1 cut(s)	844
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 171, 322, 624, 826
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	805
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstZI	CGGCCG	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	319, 829
BtrI	CACGTC	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	3 cut(s)	225, 645, 732
Cac8I	GCNNGC	3 cut(s)	176, 242, 831
CaiI	CAGNNNCTG	1 cut(s)	358
CciNI	GCGGCCGC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	862
Cfr13I	GGNCC	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	112, 356, 607
CviAII	CATG	2 cut(s)	598, 644
CviQI	GTAC	3 cut(s)	112, 356, 607
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	846
DpnII	GATC	1 cut(s)	844
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
Eam1104I	CTCTTC	3 cut(s)	89, 531, 546
EarI	CTCTTC	3 cut(s)	89, 531, 546
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	83, 822
Eco47I	GGWCC	1 cut(s)	764
Eco52I	CGGCCG	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	3 cut(s)	151, 249, 621
Eco88I	CYCGRG	2 cut(s)	82, 179
EcoICRI	GAGCTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	805
EcoT38I	GRGCYC	2 cut(s)	83, 822
FaeI	CATG	2 cut(s)	601, 647
FaiI	YATR	7 cut(s)	501, 576, 594, 599, 645, 762, 791
FalI	AAGNNNNNCTT	4 cut(s)	440, 472, 806, 838
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	2 cut(s)	597, 643
FauI	CCCGC	2 cut(s)	126, 139
Fnu4HI	GCNGC	7 cut(s)	144, 192, 195, 245, 317, 320, 323
FriOI	GRGCYC	2 cut(s)	83, 822
Fsp4HI	GCNGC	7 cut(s)	144, 192, 195, 245, 317, 320, 323
FspBI	CTAG	3 cut(s)	414, 453, 485
GlaI	GCGC	1 cut(s)	861
GluI	GCNGC	7 cut(s)	144, 192, 195, 245, 317, 320, 323
GsuI	CTGGAG	1 cut(s)	598
HaeII	RGCGCY	1 cut(s)	863
HaeIII	GGCC	2 cut(s)	319, 829
HapII	CCGG	5 cut(s)	158, 251, 767, 783, 863
HhaI	GCGC	1 cut(s)	862
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	601, 647
Hin6I	GCGC	1 cut(s)	860
HinP1I	GCGC	1 cut(s)	860
HinfI	GANTC	4 cut(s)	37, 62, 266, 377
HpaII	CCGG	5 cut(s)	158, 251, 767, 783, 863
HphI	GGTGA	5 cut(s)	71, 172, 340, 437, 797
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	42, 67, 744
Hpy188III	TCNNGA	2 cut(s)	10, 251
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	196, 372
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	3 cut(s)	335, 346, 622
HpyCH4V	TGCA	5 cut(s)	51, 225, 285, 643, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 171, 322, 624, 826
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	3 cut(s)	335, 346, 622
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	601, 647
HspAI	GCGC	1 cut(s)	860
Kpn2I	TCCGGA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	844
LmnI	GCTCC	2 cut(s)	817, 865
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	3 cut(s)	414, 453, 485
MaeII	ACGT	3 cut(s)	335, 346, 622
MalI	GATC	1 cut(s)	846
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	1 cut(s)	844
MhlI	GDGCHC	4 cut(s)	83, 227, 242, 822
MluCI	AATT	4 cut(s)	16, 53, 124, 391
MlyI	GAGTC	3 cut(s)	46, 275, 371
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	2 cut(s)	372, 585
MslI	CAYNNNNRTG	2 cut(s)	230, 638
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	5 cut(s)	158, 251, 767, 783, 863
MspR9I	CCNGG	1 cut(s)	807
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	5 cut(s)	127, 171, 322, 624, 826
NdeII	GATC	1 cut(s)	844
NlaIII	CATG	2 cut(s)	601, 647
NlaIV	GGNNCC	1 cut(s)	819
NmeAIII	GCCGAG	2 cut(s)	60, 111
NotI	GCGGCCGC	1 cut(s)	317
OliI	CACNNNNGTG	2 cut(s)	230, 638
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	7 cut(s)	145, 193, 196, 246, 318, 321, 324
PleI	GAGTC	3 cut(s)	45, 274, 371
PpsI	GAGTC	3 cut(s)	45, 274, 371
Ppu21I	YACGTR	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	1 cut(s)	819
PspPI	GGNCC	1 cut(s)	764
PstNI	CAGNNNCTG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	113, 357, 608
RsaNI	GTAC	3 cut(s)	112, 356, 607
RseI	CAYNNNNRTG	2 cut(s)	230, 638
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	372, 585
SatI	GCNGC	7 cut(s)	144, 192, 195, 245, 317, 320, 323
Sau3AI	GATC	1 cut(s)	844
Sau96I	GGNCC	1 cut(s)	764
SchI	GAGTC	3 cut(s)	46, 275, 371
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	4 cut(s)	83, 227, 242, 822
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	2 cut(s)	230, 638
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	4 cut(s)	16, 53, 124, 391
SspMI	CTAG	3 cut(s)	414, 453, 485
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	3 cut(s)	338, 349, 625
TaqI	TCGA	3 cut(s)	269, 338, 506
TasI	AATT	4 cut(s)	16, 53, 124, 391
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	6 cut(s)	146, 197, 247, 319, 322, 325
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	372, 585
Tru9I	TTAA	2 cut(s)	372, 585
TscAI	CASTG	3 cut(s)	232, 645, 732
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	3 cut(s)	232, 645, 732
VneI	GTGCAC	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	2 cut(s)	16, 53
XspI	CTAG	3 cut(s)	414, 453, 485
ZraI	GACGTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.