Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038669.1

Orthogroup ID

OG0029630

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 676

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038669.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 676 bp

cccgctcaatttgctcggcgaggtggcggcggggattattccggtgagcttcaggggcttgcttgggtcggttgctgcggcggagaagggaggagggttttcgtggtgcactgaagtgtcgtgctcgccacctccggaggaggaggcggagtcgaaatcgaaggtatgcaaatccgcaaaagggaaggctgaggtttcgcggccgccgctggtgaggacgtcgaggggacgtgttcaggtactgccttctcggtttaatgactcggttattgagaattggaagaaagagagtaagactagtttgcgtggtgatagtaatgttgaagatgagaagcctagcttgaaaccccagaaaaatggaaagaagctagggaataatgtgtatggctcgaagaagtattcgggtttgtgtgaggaagaagaggaggaggaggaagaagaggaggaagatgaagatggctatgtgccgtttaagagttataacatgaggaagtacaactccagctcacgtagcacactcacttcagtgcatgagcatttggttgaagatgataagtgtgcggttgtggagattattgaagaagaagaagaagaagatgatttagagggtgcagtgaggatttcaaatcagaggacagatgggttgtatggaccggaggacttttattccggtgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

225

Amino Acids

24.89

Weight (kDa)

4.68

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029630)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0380891
rosa_multiflora	Rmu_sc0038669.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	481
AatII	GACGTC	1 cut(s)	222
AccBSI	CCGCTC	1 cut(s)	5
AccII	CGCG	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	3 cut(s)	35, 133, 508
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	241, 495
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	5 cut(s)	324, 344, 546, 579, 625
AhlI	ACTAGT	1 cut(s)	297
AjiI	CACGTC	1 cut(s)	231
AleI	CACNNNNGTG	2 cut(s)	114, 525
AluBI	AGCT	4 cut(s)	49, 340, 368, 505
AluI	AGCT	4 cut(s)	49, 340, 368, 505
Alw21I	GWGCWC	2 cut(s)	111, 126
Alw44I	GTGCAC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	3 cut(s)	56, 224, 321
AvaII	GGWCC	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 126
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	450, 633
BceAI	ACGGC	1 cut(s)	452
BcuI	ACTAGT	1 cut(s)	297
BfaI	CTAG	3 cut(s)	298, 337, 369
BisI	GCNGC	6 cut(s)	28, 76, 79, 201, 204, 207
BlsI	GCNGC	6 cut(s)	29, 77, 80, 202, 205, 208
Bme18I	GGWCC	1 cut(s)	651
BmgBI	CACGTC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	219
BsaWI	WCCGGW	4 cut(s)	41, 134, 653, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseAI	TCCGGA	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	7 cut(s)	106, 153, 156, 438, 441, 444, 456
BseSI	GKGCMC	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	111, 126
BsiSI	CCGG	4 cut(s)	42, 135, 654, 670
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	111, 126
Bsp13I	TCCGGA	1 cut(s)	134
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	182
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	5
BssNI	GRCGYC	1 cut(s)	219
Bst6I	CTCTTC	2 cut(s)	415, 433
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	60, 126
BstDEI	CTNAG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	200
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 55, 206, 511
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstZI	CGGCCG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	203
BtrI	CACGTC	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	3 cut(s)	109, 532, 619
Cac8I	GCNNGC	2 cut(s)	60, 126
CaiI	CAGNNNCTG	1 cut(s)	242
CciNI	GCGGCCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	651
Csp6I	GTAC	2 cut(s)	240, 494
CviAII	CATG	2 cut(s)	485, 531
CviQI	GTAC	2 cut(s)	240, 494
DdeI	CTNAG	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	415, 433
EarI	CTCTTC	2 cut(s)	415, 433
EciI	GGCGGA	2 cut(s)	96, 162
EclXI	CGGCCG	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	651
Eco52I	CGGCCG	1 cut(s)	201
Eco57I	CTGAAG	3 cut(s)	35, 133, 508
FaeI	CATG	2 cut(s)	488, 534
FaiI	YATR	7 cut(s)	167, 385, 463, 481, 486, 532, 649
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	484, 530
FauI	CCCGC	2 cut(s)	10, 23
Fnu4HI	GCNGC	6 cut(s)	28, 76, 79, 201, 204, 207
Fsp4HI	GCNGC	6 cut(s)	28, 76, 79, 201, 204, 207
FspBI	CTAG	3 cut(s)	298, 337, 369
GluI	GCNGC	6 cut(s)	28, 76, 79, 201, 204, 207
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	4 cut(s)	42, 135, 654, 670
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	488, 534
HinfI	GANTC	2 cut(s)	150, 261
HpaII	CCGG	4 cut(s)	42, 135, 654, 670
HphI	GGTGA	3 cut(s)	56, 224, 321
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	4 cut(s)	80, 155, 179, 256
HpyCH4IV	ACGT	3 cut(s)	219, 230, 509
HpyCH4V	TGCA	4 cut(s)	109, 169, 530, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 55, 206, 511
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	3 cut(s)	219, 230, 509
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	488, 534
Kpn2I	TCCGGA	1 cut(s)	134
LpnPI	CCDG	8 cut(s)	38, 55, 148, 195, 222, 363, 515, 667
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	298, 337, 369
MaeII	ACGT	3 cut(s)	219, 230, 509
MbiI	CCGCTC	1 cut(s)	5
MhlI	GDGCHC	2 cut(s)	111, 126
MluCI	AATT	2 cut(s)	8, 275
MlyI	GAGTC	2 cut(s)	159, 255
MroI	TCCGGA	1 cut(s)	134
MseI	TTAA	2 cut(s)	256, 472
MslI	CAYNNNNRTG	2 cut(s)	114, 525
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	4 cut(s)	42, 135, 654, 670
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	11, 55, 206, 511
NlaIII	CATG	2 cut(s)	488, 534
NotI	GCGGCCGC	1 cut(s)	201
OliI	CACNNNNGTG	2 cut(s)	114, 525
PkrI	GCNGC	6 cut(s)	29, 77, 80, 202, 205, 208
PleI	GAGTC	2 cut(s)	158, 255
PpsI	GAGTC	2 cut(s)	158, 255
Ppu21I	YACGTR	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	241, 495
RsaNI	GTAC	2 cut(s)	240, 494
RseI	CAYNNNNRTG	2 cut(s)	114, 525
SaqAI	TTAA	2 cut(s)	256, 472
SatI	GCNGC	6 cut(s)	28, 76, 79, 201, 204, 207
Sau96I	GGNCC	1 cut(s)	651
SchI	GAGTC	2 cut(s)	159, 255
SduI	GDGCHC	2 cut(s)	111, 126
SinI	GGWCC	1 cut(s)	651
SmiMI	CAYNNNNRTG	2 cut(s)	114, 525
SpeI	ACTAGT	1 cut(s)	297
Sse9I	AATT	2 cut(s)	8, 275
SspMI	CTAG	3 cut(s)	298, 337, 369
TaiI	ACGT	3 cut(s)	222, 233, 512
TaqI	TCGA	4 cut(s)	153, 159, 222, 390
TasI	AATT	2 cut(s)	8, 275
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	5 cut(s)	30, 81, 203, 206, 209
Tru1I	TTAA	2 cut(s)	256, 472
Tru9I	TTAA	2 cut(s)	256, 472
TscAI	CASTG	3 cut(s)	116, 532, 619
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	466
TspRI	CASTG	3 cut(s)	116, 532, 619
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	651
XspI	CTAG	3 cut(s)	298, 337, 369
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.