Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024848

Physical Location & Seq

Genomic Coordinates Forward (+)

7547627 .. 7549962

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGGATTCATCATCCACAGGATCCACTATGTTCTCTCCTTACAAGATGGGCATGTTTAATCCCTCTCACAGGTATCCAAGTGTTCCTGGGATTTACACAGAAGAACACATTGAGGCATGGAAGAAGGTGGTTGACGCCGTACATGCCAAAGGTGCCATTATTTTCTGTCAACTTTGGCATGTAGTTGTACTTCTCATCAAGATTCGTGCGGCACACGGCTACTTCGTTGATCAATTCCTAAAAGATGGAATCAACGATCGAACTGATGATTATGGTGGGTCGCTTGCAAACCGTTGCAAATTCTTGATTCAAATTGTTCAAGCAGTAGTTGAAGCAAGTGGTGCTGACAAACCGGCTATTGATTTTCATGATGCTACGGACTCTGACCCGTACGTTTGGCCTAGGCCTTGCAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

140

Amino Acids

15.59

Weight (kDa)

6.02

Isoelectric Point (pI)

24.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	22 - 62	5.4e-09	NADH:flavin oxidoreductase / NADH oxidase family
Oxidored_FMN	PF00724	67 - 118	6.2e-16	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0094591
rosa_laevigata	RLG00000016503
rosa_rugosa	Rorug02G0045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	2 cut(s)	5, 212
AclWI	GGATC	2 cut(s)	18, 31
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	3 cut(s)	144, 192, 395
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	314, 323, 335
AjnI	CCWGG	1 cut(s)	88
AlwI	GGATC	2 cut(s)	18, 31
AoxI	GGCC	2 cut(s)	401, 407
ApoI	RAATTY	1 cut(s)	302
AspA2I	CCTAGG	1 cut(s)	404
AvrII	CCTAGG	1 cut(s)	404
BamHI	GGATCC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BccI	CCATC	2 cut(s)	43, 242
BceAI	ACGGC	2 cut(s)	125, 235
BciT130I	CCWGG	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	1 cut(s)	213
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	25, 157
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	89, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	89, 404
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	403, 409
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	356
BsiWI	CGTACG	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	72
BsnI	GGCC	2 cut(s)	403, 409
Bsp143I	GATC	3 cut(s)	23, 232, 259
BspACI	CCGC	2 cut(s)	5, 212
BspANI	GGCC	2 cut(s)	403, 409
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	25, 157
BspPI	GGATC	2 cut(s)	18, 31
BspT107I	GGYRCC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	89, 404
BssMI	GATC	3 cut(s)	23, 232, 259
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	26, 235, 262
BstMBI	GATC	3 cut(s)	23, 232, 259
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 155, 344
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	3 cut(s)	58, 149, 185
BstSCI	CCNGG	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	403, 409
BtsCI	GGATG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	355
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	143, 191, 394
CviAII	CATG	5 cut(s)	55, 120, 146, 182, 371
CviJI	RGCY	4 cut(s)	222, 359, 403, 409
CviKI_1	RGCY	4 cut(s)	222, 359, 403, 409
CviQI	GTAC	3 cut(s)	143, 191, 394
DpnI	GATC	3 cut(s)	25, 234, 261
DpnII	GATC	3 cut(s)	23, 232, 259
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	404
Eco147I	AGGCCT	1 cut(s)	409
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	5 cut(s)	58, 123, 149, 185, 374
FaiI	YATR	7 cut(s)	32, 56, 121, 147, 183, 276, 372
FatI	CATG	5 cut(s)	54, 119, 145, 181, 370
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	403, 409
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	58, 123, 149, 185, 374
HincII	GTYRAC	2 cut(s)	136, 173
HindII	GTYRAC	2 cut(s)	136, 173
HinfI	GANTC	5 cut(s)	8, 205, 252, 310, 383
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	136, 173
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	202, 307, 371
Hpy8I	GTNNAC	2 cut(s)	136, 173
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	3 cut(s)	290, 300, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 155, 344
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	58, 123, 149, 185, 374
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	23, 232, 259
LpnPI	CCDG	5 cut(s)	6, 58, 75, 102, 369
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	396
MalI	GATC	3 cut(s)	25, 234, 261
MboI	GATC	3 cut(s)	23, 232, 259
MboII	GAAGA	2 cut(s)	116, 136
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	4 cut(s)	236, 302, 315, 418
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	76, 109
MseI	TTAA	1 cut(s)	60
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	146, 155, 344
NdeII	GATC	3 cut(s)	23, 232, 259
NlaIII	CATG	5 cut(s)	58, 123, 149, 185, 374
NlaIV	GGNNCC	2 cut(s)	25, 157
NspI	RCATGY	3 cut(s)	58, 149, 185
PagI	TCATGA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	4 cut(s)	8, 205, 252, 310
Pfl23II	CGTACG	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	262
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspLI	CGTACG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	25, 157
PsuI	RGATCY	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	262
RsaI	GTAC	3 cut(s)	144, 192, 395
RsaNI	GTAC	3 cut(s)	143, 191, 394
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	3 cut(s)	23, 232, 259
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	4 cut(s)	77, 132, 157, 399
SfaNI	GCATC	1 cut(s)	364
Sse9I	AATT	4 cut(s)	236, 302, 315, 418
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	5, 212
SspMI	CTAG	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	262
TasI	AATT	4 cut(s)	236, 302, 315, 418
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	4 cut(s)	8, 205, 252, 310
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	3 cut(s)	58, 149, 185
XmaJI	CCTAGG	1 cut(s)	404
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.