Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0024848

Physical Location & Seq

Genomic Coordinates Forward (+)

7151255 .. 7153479

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACAAGGTGTCGAGCTCCGAACGAAATTCCACAGCCAGCAATGATTGAGTATCGACGTGTTCCTGGGATTTATAGAGATGAACAGGTTGAGGAATGGAAGAAGGTGGTCGACGCCGTTCACACCAAAGGTGCCATTATTTTCTGTCAACTTTGGCATGCAGGTCGTGCTTCTCATCAAGGTTTTGATGGAATTGAGATCCATGCGGCGCACGGCTACCTCGTTGATCAATTCTTGAAAGATGGAATCAACGATCGAACTGATGAGTATGGTGGGACGCTTGCAAACCGTTGCAAATTCTTGATTCAAATTGTTCAAGCAGTAGTTGAAGCCATTGGTGCTGAGAGAGTTGCCGTTAGAATCTCACCAGCCATTGATTTTCATGATGCTACGGACTCCAACCCGTTTGGCCTAGGCCTTGCTGTGATTGACAGGCTTAATAAGCTTCAACACAACGAAGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

5.76

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	18 - 58	6.6e-10	NADH:flavin oxidoreductase / NADH oxidase family
Oxidored_FMN	PF00724	54 - 133	5e-29	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0094591
rosa_laevigata	RLG00000016503
rosa_rugosa	Rorug02G0045200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	27, 296
AcyI	GRCGYC	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	5 cut(s)	238, 308, 317, 329, 449
AhdI	GACNNNNNGTC	1 cut(s)	9
AjiI	CACGTC	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	17, 445
AluI	AGCT	2 cut(s)	17, 445
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	409, 415
ApoI	RAATTY	2 cut(s)	27, 296
AspA2I	CCTAGG	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	357
AvrII	CCTAGG	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	2 cut(s)	182, 236
BceAI	ACGGC	3 cut(s)	101, 229, 338
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	226
BfaI	CTAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	207
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	65, 412
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	65, 412
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	411, 417
BshNI	GGYRCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	411, 417
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	198, 226, 253
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	411, 417
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	65, 412
BssMI	GATC	3 cut(s)	198, 226, 253
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	39, 159, 282
BstDEI	CTNAG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	3 cut(s)	201, 229, 256
BstMBI	GATC	3 cut(s)	198, 226, 253
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 338, 442
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	411, 417
BtrI	CACGTC	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	39, 159, 282
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	211
CseI	GACGC	2 cut(s)	122, 286
CviAII	CATG	3 cut(s)	158, 203, 383
CviJI	RGCY	9 cut(s)	17, 37, 216, 332, 371, 411, 417, 436, 445
CviKI_1	RGCY	9 cut(s)	17, 37, 216, 332, 371, 411, 417, 436, 445
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	200, 228, 255
DpnII	GATC	3 cut(s)	198, 226, 253
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	3 cut(s)	161, 206, 386
FaiI	YATR	6 cut(s)	75, 159, 204, 270, 384, 466
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	3 cut(s)	157, 202, 382
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	411, 417
HgaI	GACGC	2 cut(s)	122, 286
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	161, 206, 386
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	2 cut(s)	112, 149
HindII	GTYRAC	2 cut(s)	112, 149
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	5 cut(s)	246, 304, 360, 395, 461
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	3 cut(s)	112, 121, 149
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	235, 301, 383
Hpy8I	GTNNAC	3 cut(s)	112, 121, 149
Hpy99I	CGWCG	2 cut(s)	60, 116
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	161, 284, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 338, 442
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	161, 206, 386
HspAI	GCGC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	198, 226, 253
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	51, 51, 71, 78, 147, 381, 418
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	58
MalI	GATC	3 cut(s)	200, 228, 255
MboI	GATC	3 cut(s)	198, 226, 253
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	5 cut(s)	27, 192, 230, 296, 309
MlyI	GAGTC	2 cut(s)	389, 455
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	2 cut(s)	85, 230
MseI	TTAA	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	167, 338, 442
NdeII	GATC	3 cut(s)	198, 226, 253
NlaIII	CATG	3 cut(s)	161, 206, 386
NlaIV	GGNNCC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PagI	TCATGA	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	246, 304, 360
PkrI	GCNGC	1 cut(s)	208
Ple19I	CGATCG	1 cut(s)	256
PleI	GAGTC	2 cut(s)	389, 455
PpsI	GAGTC	2 cut(s)	389, 455
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	198, 226, 253
SchI	GAGTC	2 cut(s)	389, 455
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	1 cut(s)	376
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	5 cut(s)	27, 192, 230, 296, 309
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	4 cut(s)	13, 55, 111, 256
TasI	AATT	5 cut(s)	27, 192, 230, 296, 309
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	246, 304, 360
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	96, 371
TspGWI	ACGGA	1 cut(s)	407
XapI	RAATTY	2 cut(s)	27, 296
XceI	RCATGY	1 cut(s)	161
XmaJI	CCTAGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.