RchiOBHm_Chr2g0095081

Tubulin--tyrosine ligase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029715
Physical Location & Seq
Reverse (-)
7950988 .. 7951336
349 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47007

Sequence Viewer

Length: 240 bp
ATGATCCGATCAGTCTTTGAGGCAGCTGCAAAAGCGCACCTTGAGATGCAAAGTCCAACGACGAGGGCCATGAATGGTGTGGATGTCATGCTTGATACTCCTTTCCAGCCAAAGTTACTGGAGGTGACTTACTGTCCTGACTGTACAAGAGCATGCAAATATGATATGGAGGCAGCTCGTGACTTTTACATCTTTGGTTGTCTCTTTTTGAATGAAACCACTCATGTTCATTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TTL

Protein Analysis

79

Amino Acids

9.07

Weight (kDa)

5.43

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TTL PF03133 16 - 59 9.9e-08 Tubulin-tyrosine ligase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029715)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0095081
rosa_multiflora Rmu_sc0041839.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 211
AhdI GACNNNNNGTC 1 cut(s) 132
AluBI AGCT 2 cut(s) 26, 176
AluI AGCT 2 cut(s) 26, 176
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 23, 26, 173
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 136
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 3 cut(s) 13, 35, 185
BcoDI GTCTC 1 cut(s) 206
BisI GCNGC 3 cut(s) 24, 27, 174
BlsI GCNGC 3 cut(s) 25, 28, 175
BmeRI GACNNNNNGTC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 66
BmsI GCATC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 13, 35, 185
BshFI GGCC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 68
Bsp1407I TGTACA 1 cut(s) 143
Bsp143I GATC 2 cut(s) 3, 8
BspANI GGCC 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 143
BsrI ACTGG 1 cut(s) 123
BssMI GATC 2 cut(s) 3, 8
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 134, 143
BstAUI TGTACA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 6, 11
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 3, 8
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 13, 35, 185
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 144
CviAII CATG 4 cut(s) 70, 88, 153, 224
CviJI RGCY 4 cut(s) 26, 68, 109, 176
CviKI_1 RGCY 4 cut(s) 26, 68, 109, 176
CviQI GTAC 1 cut(s) 144
DpnI GATC 2 cut(s) 5, 10
DpnII GATC 2 cut(s) 3, 8
DriI GACNNNNNGTC 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 132
FaeI CATG 4 cut(s) 73, 91, 156, 227
FaiI YATR 7 cut(s) 71, 89, 154, 162, 167, 225, 234
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 4 cut(s) 69, 87, 152, 223
Fnu4HI GCNGC 3 cut(s) 24, 27, 174
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 24, 27, 174
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 24, 27, 174
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 73, 91, 156, 227
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 137, 179
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 134, 143
HpyCH4V TGCA 3 cut(s) 29, 49, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92II CATG 4 cut(s) 73, 91, 156, 227
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 3, 8
LpnPI CCDG 3 cut(s) 104, 119, 150
Lsp1109I GCAGC 3 cut(s) 13, 35, 185
LweI GCATC 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 114, 124, 179
MalI GATC 2 cut(s) 5, 10
MboI GATC 2 cut(s) 3, 8
MluCI AATT 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 4 cut(s) 13, 57, 115, 163
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 2 cut(s) 3, 8
NlaIII CATG 4 cut(s) 73, 91, 156, 227
NmuCI GTSAC 2 cut(s) 124, 179
NspI RCATGY 1 cut(s) 156
PaeI GCATGC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 25, 28, 175
PsiI TTATAA 1 cut(s) 234
PspPI GGNCC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SatI GCNGC 3 cut(s) 24, 27, 174
Sau3AI GATC 2 cut(s) 3, 8
Sau96I GGNCC 1 cut(s) 66
SetI ASST 4 cut(s) 28, 42, 126, 178
SfaNI GCATC 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 156
Sse9I AATT 1 cut(s) 235
TaaI ACNGT 2 cut(s) 134, 143
TasI AATT 1 cut(s) 235
TatI WGTACW 1 cut(s) 143
TseFI GTSAC 2 cut(s) 124, 179
TseI GCWGC 3 cut(s) 23, 26, 173
Tsp45I GTSAC 2 cut(s) 124, 179
TspDTI ATGAA 3 cut(s) 86, 218, 228
XceI RCATGY 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.