Rmu_sc0041839.1_g000001

Tubulin--tyrosine ligase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041839.1
OG0029715
Physical Location & Seq
Forward (+)
32 .. 407
376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041839.1_g000001.1.cds

Sequence Viewer

Length: 273 bp
atgatccgatcggtctttgaggcagctgcaaaagtgcaccctgagatgcatagtccaacgtcgagggctatgtatggtgtggatgtcatgcttgatacttctttcctgccaaagttactggaggtgacttactgtcctgactgtacaagagcatgcaagtatgatatggaggcaatagtcgcaggaggggaagtggttagagctcgtgaattttataactatgtctttggttgtctctttttgaatgaagccactcatgttagtccattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TTL

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

5.48

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029715)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0095081
rosa_multiflora Rmu_sc0041839.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 244
AhdI GACNNNNNGTC 1 cut(s) 132
AluBI AGCT 2 cut(s) 26, 203
AluI AGCT 2 cut(s) 26, 203
Alw21I GWGCWC 2 cut(s) 39, 205
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 35
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 23, 26
ApoI RAATTY 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 39
BanII GRGCYC 1 cut(s) 205
BauI CACGAG 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 39, 205
BbvI GCAGC 2 cut(s) 13, 35
BcoDI GTCTC 1 cut(s) 239
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
BmeRI GACNNNNNGTC 1 cut(s) 132
BmsI GCATC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 2 cut(s) 13, 35
Bsh1285I CGRYCG 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 39, 205
BsmAI GTCTC 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 39, 205
Bsp1407I TGTACA 1 cut(s) 143
Bsp143I GATC 2 cut(s) 3, 8
BspCNI CTCAG 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 143
BsrI ACTGG 1 cut(s) 123
BssMI GATC 2 cut(s) 3, 8
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 134, 143
BstAUI TGTACA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 6, 11
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 3, 8
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 13, 35
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 144
CviAII CATG 3 cut(s) 88, 153, 257
CviJI RGCY 4 cut(s) 26, 68, 203, 251
CviKI_1 RGCY 4 cut(s) 26, 68, 203, 251
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 5, 10
DpnII GATC 2 cut(s) 3, 8
DriI GACNNNNNGTC 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 3 cut(s) 91, 156, 260
FatI CATG 3 cut(s) 87, 152, 256
Fnu4HI GCNGC 2 cut(s) 24, 27
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 24, 27
GluI GCNGC 2 cut(s) 24, 27
GsuI CTGGAG 1 cut(s) 140
Hin1II CATG 3 cut(s) 91, 156, 260
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 137, 206
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 134, 143
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 29, 37, 49, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 3 cut(s) 91, 156, 260
Kzo9I GATC 2 cut(s) 3, 8
LpnPI CCDG 5 cut(s) 54, 104, 119, 150, 168
Lsp1109I GCAGC 2 cut(s) 13, 35
LweI GCATC 1 cut(s) 36
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 114, 124
MalI GATC 2 cut(s) 5, 10
MboI GATC 2 cut(s) 3, 8
MhlI GDGCHC 2 cut(s) 39, 205
MluCI AATT 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 5 cut(s) 13, 57, 115, 163, 179
Mph1103I ATGCAT 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 3, 8
NlaIII CATG 3 cut(s) 91, 156, 260
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 51
NspI RCATGY 1 cut(s) 156
PaeI GCATGC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 25, 28
Ple19I CGATCG 1 cut(s) 11
PsiI TTATAA 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 205
PvuI CGATCG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SacI GAGCTC 1 cut(s) 205
SatI GCNGC 2 cut(s) 24, 27
Sau3AI GATC 2 cut(s) 3, 8
SduI GDGCHC 2 cut(s) 39, 205
SetI ASST 4 cut(s) 28, 62, 126, 205
SfaNI GCATC 1 cut(s) 36
SphI GCATGC 1 cut(s) 156
Sse9I AATT 1 cut(s) 209
SstI GAGCTC 1 cut(s) 205
TaaI ACNGT 2 cut(s) 134, 143
TaiI ACGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 62
TasI AATT 1 cut(s) 209
TatI WGTACW 1 cut(s) 143
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 23, 26
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 261
VneI GTGCAC 1 cut(s) 35
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.