Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021352

Physical Location & Seq

Genomic Coordinates Forward (+)

9025457 .. 9025960

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47110

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGTTCACTTTCGATTCTATCAATGGGAAAATCGCAATACTTGTAATAACACTTGCGGTTGAAGTTGTCAATCCCAATCCCAACATTCTCAATGGCACGAAGCTCTCACTCAAAATGCATAACACCAAATCGAGTGACATCCTCGATCGGAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

52

Amino Acids

5.77

Weight (kDa)

9.52

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021352)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0096131
rosa_roxburghii	Rroxscaffold_2G00145060
rosa_rugosa	Rorug02G0065000.1 Rorug02G0065100.1 Rorug02G0065200.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	62
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	150
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	148
BsiEI	CGRYCG	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	56
BssMI	GATC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMCI	CGRYCG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	138
CviJI	RGCY	1 cut(s)	103
CviKI_1	RGCY	1 cut(s)	103
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	120
FaiI	YATR	1 cut(s)	120
FokI	GGATG	1 cut(s)	125
HinfI	GANTC	2 cut(s)	14, 151
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MnlI	CCTC	1 cut(s)	152
Mph1103I	ATGCAT	1 cut(s)	120
NdeII	GATC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	14, 151
Ple19I	CGATCG	1 cut(s)	148
PvuI	CGATCG	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	145
SetI	ASST	1 cut(s)	105
SgeI	CNNG	5 cut(s)	53, 65, 109, 144, 155
SsiI	CCGC	1 cut(s)	56
TaqI	TCGA	3 cut(s)	12, 131, 144
TfiI	GAWTC	2 cut(s)	14, 151
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.