Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0021352

Physical Location & Seq

Genomic Coordinates Forward (+)

82928079 .. 82928803

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTGTGGAGATCTCATAATGATGTCGTTCAAGTTGAAATTAAGTTTGTCTCACACTGTTTCGTGTTTAAAACCGTGTACGGGACAATCACGCCGCGGTGGACTTCAAGTCTTCGATCAAGATTATTGGGCAGCACTTCTTTACCAGTATTGCTGCAATATGTTCGTGCTTATATAATGACCAAACCTGATGTATTGAACATTGGTTCGATGTTCACTTTCGATTCTGTCATTGGGAAAATTGCAAAACTTGCCATAACACTTGCGGTTGAAGATGTCAATTCCAATCCCAACATTCTCTATGGCACAACACTCTCACTCAAAATGCATAACACCAAATCGAGTGACTTCCTCGGAATCATTGAAGGTATGAGAAATATTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

128

Amino Acids

14.4

Weight (kDa)

9.61

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	83 - 120	6.9e-06	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021352)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0096131
rosa_roxburghii	Rroxscaffold_2G00145060
rosa_rugosa	Rorug02G0065000.1 Rorug02G0065100.1 Rorug02G0065200.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	97
AciI	CCGC	3 cut(s)	95, 97, 266
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	6 cut(s)	32, 38, 108, 199, 272, 365
AhdI	GACNNNNNGTC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	132, 154
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	141, 144
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	95, 133, 155
BlsI	GCNGC	3 cut(s)	96, 134, 156
BmeRI	GACNNNNNGTC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	95, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	95, 352
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	141, 144
Bsh1236I	CGCG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	11, 116
BspACI	CCGC	3 cut(s)	95, 97, 266
BspFNI	CGCG	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	95, 352
BssMI	GATC	2 cut(s)	11, 116
Bst4CI	ACNGT	2 cut(s)	59, 76
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	14, 119
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	11, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	141, 144
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	55
Cfr42I	CCGCGG	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	79
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	2 cut(s)	13, 118
DpnII	GATC	2 cut(s)	11, 116
DraI	TTTAAA	1 cut(s)	70
DriI	GACNNNNNGTC	1 cut(s)	108
Eam1105I	GACNNNNNGTC	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	330
FaiI	YATR	8 cut(s)	18, 162, 174, 176, 257, 303, 330, 371
FaqI	GGGAC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	95, 133, 155
Fsp4HI	GCNGC	3 cut(s)	95, 133, 155
GluI	GCNGC	3 cut(s)	95, 133, 155
HinfI	GANTC	2 cut(s)	224, 357
Hpy166II	GTNNAC	3 cut(s)	79, 102, 216
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	3 cut(s)	79, 102, 216
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	59, 76
HpyCH4V	TGCA	3 cut(s)	157, 245, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
KspI	CCGCGG	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	11, 116
LpnPI	CCDG	2 cut(s)	159, 201
Lsp1109I	GCAGC	2 cut(s)	141, 144
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	13, 118
MboI	GATC	2 cut(s)	11, 116
MboII	GAAGA	2 cut(s)	104, 284
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	3 cut(s)	39, 240, 280
MnlI	CCTC	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	330
MseI	TTAA	2 cut(s)	42, 69
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	2 cut(s)	11, 116
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	224, 357
PkrI	GCNGC	3 cut(s)	96, 134, 156
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	42, 69
SatI	GCNGC	3 cut(s)	95, 133, 155
Sau3AI	GATC	2 cut(s)	11, 116
SetI	ASST	2 cut(s)	190, 370
Sfr303I	CCGCGG	1 cut(s)	98
SgrBI	CCGCGG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	3 cut(s)	39, 240, 280
SsiI	CCGC	3 cut(s)	95, 97, 266
SspI	AATATT	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	59, 76
TaqI	TCGA	4 cut(s)	115, 209, 222, 341
TasI	AATT	3 cut(s)	39, 240, 280
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	224, 357
Tru1I	TTAA	2 cut(s)	42, 69
Tru9I	TTAA	2 cut(s)	42, 69
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	2 cut(s)	132, 154
Tsp45I	GTSAC	1 cut(s)	344
TspRI	CASTG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.