RchiOBHm_Chr2g0105361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0021340
Physical Location & Seq
Forward (+)
16655758 .. 16656511
754 bp
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UTR
Exon/CDS
Intron
PRQ47958

Sequence Viewer

Length: 216 bp
ATGGCTAATCCCGGAGTCGGGGCAAAGTTTGTATCTGTCAATCTCAACAAATCATATGGGCAGCCTTCTCATCATCACCATCCGCCGCACCCTGGCTCCTACGGCCCCAATCGGTCCAGACCCGGCGGGAGTCATGCCACTGGAGGAATGGTGGTCCTTTCCAGGCCTCGCAGTGCGCACAAGGCTGGGCCGAAGCTTTCTGTACCACCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.35

Weight (kDa)

11.6

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021340)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105361 RchiOBHm_Chr2g0145051 RchiOBHm_Chr4g0416641
rosa_samantha Rh7AG347200 Rh7CG364600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
AciI CCGC 3 cut(s) 83, 86, 126
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 3 cut(s) 17, 18, 92
AjnI CCWGG 2 cut(s) 91, 161
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AoxI GGCC 3 cut(s) 103, 164, 188
ApeKI GCWGC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 104, 114, 154, 188
AsuC2I CCSGG 2 cut(s) 12, 123
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 114, 154
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 93, 163
BcnI CCSGG 2 cut(s) 12, 123
BisI GCNGC 2 cut(s) 62, 86
BlsI GCNGC 2 cut(s) 63, 87
Bme1390I CCNGG 4 cut(s) 12, 93, 123, 163
Bme18I GGWCC 2 cut(s) 114, 154
BmgT120I GGNCC 4 cut(s) 104, 114, 154, 188
BmiI GGNNCC 2 cut(s) 97, 106
BmrFI CCNGG 4 cut(s) 12, 93, 123, 163
BpmI CTGGAG 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 12, 123
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 18, 92
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 93, 163
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 17, 18, 92
BseNI ACTGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 3 cut(s) 105, 166, 190
BsiSI CCGG 2 cut(s) 12, 123
BslI CCNNNNNNNGG 3 cut(s) 17, 18, 92
BsnI GGCC 3 cut(s) 105, 166, 190
BspACI CCGC 3 cut(s) 83, 86, 126
BspANI GGCC 3 cut(s) 105, 166, 190
BspLI GGNNCC 2 cut(s) 97, 106
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 93, 163
BstF5I GGATG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 102, 182
BstNI CCWGG 2 cut(s) 93, 163
BstSCI CCNGG 4 cut(s) 10, 91, 121, 161
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 3 cut(s) 105, 166, 190
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 138, 178
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 4 cut(s) 104, 114, 154, 188
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 134
CviJI RGCY 8 cut(s) 5, 64, 96, 105, 166, 185, 190, 196
CviKI_1 RGCY 8 cut(s) 5, 64, 96, 105, 166, 185, 190, 196
CviQI GTAC 1 cut(s) 203
EciI GGCGGA 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 114, 154
EcoRII CCWGG 2 cut(s) 91, 161
FaeI CATG 1 cut(s) 137
FaiI YATR 3 cut(s) 55, 57, 135
FatI CATG 1 cut(s) 133
FauI CCCGC 1 cut(s) 119
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 62, 86
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 62, 86
FspAI RTGCGCAY 1 cut(s) 177
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 62, 86
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 3 cut(s) 105, 166, 190
HapII CCGG 2 cut(s) 12, 123
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 15, 130
HpaII CCGG 2 cut(s) 12, 123
HphI GGTGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 182
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 9 cut(s) 25, 78, 105, 126, 130, 136, 148, 171, 175
Lsp1109I GCAGC 1 cut(s) 73
MlyI GAGTC 2 cut(s) 24, 139
MnlI CCTC 2 cut(s) 137, 177
MspI CCGG 2 cut(s) 12, 123
MspR9I CCNGG 4 cut(s) 12, 93, 123, 163
MvaI CCWGG 2 cut(s) 93, 163
MwoI GCNNNNNNNGC 2 cut(s) 102, 182
NciI CCSGG 2 cut(s) 12, 123
NdeI CATATG 1 cut(s) 55
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 2 cut(s) 97, 106
NsbI TGCGCA 1 cut(s) 177
PceI AGGCCT 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 2 cut(s) 63, 87
PleI GAGTC 2 cut(s) 23, 138
PpsI GAGTC 2 cut(s) 23, 138
Psp6I CCWGG 2 cut(s) 91, 161
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 91, 161
PspN4I GGNNCC 2 cut(s) 97, 106
PspPI GGNCC 4 cut(s) 104, 114, 154, 188
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SatI GCNGC 2 cut(s) 62, 86
Sau96I GGNCC 4 cut(s) 104, 114, 154, 188
SchI GAGTC 2 cut(s) 24, 139
ScrFI CCNGG 4 cut(s) 12, 93, 123, 163
SetI ASST 1 cut(s) 198
SinI GGWCC 2 cut(s) 114, 154
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 3 cut(s) 83, 86, 126
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 4 cut(s) 10, 91, 121, 161
TaqII GACCGA 1 cut(s) 102
TauI GCSGC 1 cut(s) 88
TscAI CASTG 2 cut(s) 145, 178
TseI GCWGC 1 cut(s) 61
TspRI CASTG 2 cut(s) 145, 178
VpaK11BI GGWCC 2 cut(s) 114, 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.