RchiOBHm_Chr2g0145051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0021340
Physical Location & Seq
Reverse (-)
62634616 .. 62635362
747 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51492

Sequence Viewer

Length: 747 bp
ATGGCTAATCCCGGAGTCGGGGCAAAGTTTGTATCTGTCAATCTCAACAAATCATATGGGCAGCCTTCTCATCATCACCATCCGCCGCACCCTGGCTCCTACGGCCCCAATCGGTCCAGACCCGGCGGGAGTCATGCCACTGGAGGAATGGTGGTCCTTTCGAGGCCTCGCAGTGCGCACAAGGCTGGGCCGAAGCTTTCTGTACCACCCCCCTTGAATCTGCCCTCGCTGCGCAAAGAGCACGAGAGATTTGATTCGGCCGGTTCGGGAGGTGGGCCGGCTGGCGCAGGGGTGTCGGGGAGTGGGTCGAGGCCTAATTCGGCGGGAATGGGGTGGACGAAGCCCACTGCTGCTGTTGCATTGCAGGAGAAAGAAGTGTTTGGTGATCATGGAGCTGATGGGAATGGAATTGACCAGAGTAGTGTGCATGGTAATGATGGGGCCGGTAGGGGGAACAGTGTGGGGAGCAGTGTTTATATGCCACCTTCAGCTCGGCCTGGTTCAGTGGGACCGATTGCTACTGCTTCTGCTCCAGCTTATCACTCGTTGGAGAAAGCCATGCTGTTGAGGGGCGAGGATTTCCCTTCTCTGCAAGCTGCTTTGCCTTCTGGATCAGGGCCCGCACAGAAGCAGAAGGATGGTTTGAATCAGAAACAGAGACAAGTGCGTGATGAATTGCTGAATGATCAGAGAGGCAGTACTCATTCTAGTACGATTGTTGACATGCGCCCGCAATTGCAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

25.48

Weight (kDa)

9.93

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021340)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105361 RchiOBHm_Chr2g0145051 RchiOBHm_Chr4g0416641
rosa_samantha Rh7AG347200 Rh7CG364600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 177, 233
AciI CCGC 6 cut(s) 83, 86, 126, 323, 621, 731
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 3 cut(s) 204, 700, 712
AfiI CCNNNNNNNGG 4 cut(s) 17, 18, 92, 450
AgsI TTSAA 2 cut(s) 217, 646
AjnI CCWGG 2 cut(s) 91, 496
AluBI AGCT 5 cut(s) 196, 395, 491, 536, 596
AluI AGCT 5 cut(s) 196, 395, 491, 536, 596
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 1 cut(s) 619
AoxI GGCC 9 cut(s) 103, 164, 188, 258, 275, 311, 441, 494, 617
ApaI GGGCCC 1 cut(s) 621
ApeKI GCWGC 4 cut(s) 61, 229, 350, 596
AspLEI GCGC 4 cut(s) 178, 234, 287, 729
AspS9I GGNCC 9 cut(s) 104, 114, 154, 188, 275, 441, 509, 617, 618
AsuC2I CCSGG 2 cut(s) 12, 123
AsuHPI GGTGA 2 cut(s) 68, 395
AvaII GGWCC 3 cut(s) 114, 154, 509
BaeGI GKGCMC 1 cut(s) 621
BanII GRGCYC 1 cut(s) 621
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 4 cut(s) 73, 216, 337, 583
BccI CCATC 4 cut(s) 87, 392, 431, 632
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BciT130I CCWGG 2 cut(s) 93, 498
BclI TGATCA 2 cut(s) 385, 685
BcnI CCSGG 2 cut(s) 12, 123
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 1 cut(s) 708
BisI GCNGC 5 cut(s) 62, 86, 230, 351, 597
BlsI GCNGC 5 cut(s) 63, 87, 231, 352, 598
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 4 cut(s) 12, 93, 123, 498
Bme18I GGWCC 3 cut(s) 114, 154, 509
BmgT120I GGNCC 9 cut(s) 104, 114, 154, 188, 275, 441, 509, 617, 618
BmiI GGNNCC 5 cut(s) 97, 106, 442, 510, 619
BmrFI CCNGG 4 cut(s) 12, 93, 123, 498
BpmI CTGGAG 2 cut(s) 162, 516
BpuMI CCSGG 2 cut(s) 12, 123
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 135, 165
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 18, 92, 450
Bse118I RCCGGY 3 cut(s) 260, 277, 443
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 93, 498
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 79, 643
BseLI CCNNNNNNNGG 4 cut(s) 17, 18, 92, 450
BseMI GCAATG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 621
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 73, 216, 337, 583
BseYI CCCAGC 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 9 cut(s) 105, 166, 190, 260, 277, 313, 443, 496, 619
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 5 cut(s) 12, 123, 261, 278, 444
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 4 cut(s) 17, 18, 92, 450
BsmAI GTCTC 1 cut(s) 652
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 9 cut(s) 105, 166, 190, 260, 277, 313, 443, 496, 619
Bsp120I GGGCCC 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 243, 621
Bsp143I GATC 3 cut(s) 385, 611, 685
BspACI CCGC 6 cut(s) 83, 86, 126, 323, 621, 731
BspANI GGCC 9 cut(s) 105, 166, 190, 260, 277, 313, 443, 496, 619
BspLI GGNNCC 5 cut(s) 97, 106, 442, 510, 619
BspPI GGATC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 359
BsrFI RCCGGY 3 cut(s) 260, 277, 443
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 3 cut(s) 260, 277, 443
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 3 cut(s) 385, 611, 685
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 93, 498
Bst4CI ACNGT 1 cut(s) 458
BstC8I GCNNGC 5 cut(s) 279, 283, 594, 621, 731
BstF5I GGATG 2 cut(s) 79, 643
BstHHI GCGC 4 cut(s) 178, 234, 287, 729
BstKTI GATC 3 cut(s) 388, 614, 688
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 3 cut(s) 385, 611, 685
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 5 cut(s) 102, 182, 229, 238, 356
BstNI CCWGG 2 cut(s) 93, 498
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 4 cut(s) 10, 91, 121, 496
BstSLI GKGCMC 1 cut(s) 621
BstV1I GCAGC 4 cut(s) 73, 216, 337, 583
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 9 cut(s) 105, 166, 190, 260, 277, 313, 443, 496, 619
BtsCI GGATG 2 cut(s) 79, 643
BtsI GCAGTG 3 cut(s) 178, 345, 475
BtsIMutI CAGTG 6 cut(s) 138, 178, 345, 463, 475, 510
Cac8I GCNNGC 5 cut(s) 279, 283, 594, 621, 731
CfoI GCGC 4 cut(s) 178, 234, 287, 729
Cfr10I RCCGGY 3 cut(s) 260, 277, 443
Cfr13I GGNCC 9 cut(s) 104, 114, 154, 188, 275, 441, 509, 617, 618
Csp6I GTAC 3 cut(s) 203, 699, 711
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 5 cut(s) 134, 389, 428, 559, 724
CviQI GTAC 3 cut(s) 203, 699, 711
DpnI GATC 3 cut(s) 387, 613, 687
DpnII GATC 3 cut(s) 385, 611, 685
EaeI YGGCCR 1 cut(s) 258
EagI CGGCCG 1 cut(s) 258
EciI GGCGGA 1 cut(s) 72
EclXI CGGCCG 1 cut(s) 258
Eco147I AGGCCT 2 cut(s) 166, 313
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 3 cut(s) 114, 154, 509
Eco52I CGGCCG 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 91, 496
EcoT38I GRGCYC 1 cut(s) 621
FaeI CATG 5 cut(s) 137, 392, 431, 562, 727
FaqI GGGAC 1 cut(s) 522
FatI CATG 5 cut(s) 133, 388, 427, 558, 723
FauI CCCGC 4 cut(s) 119, 316, 628, 738
FauNDI CATATG 1 cut(s) 55
FbaI TGATCA 2 cut(s) 385, 685
Fnu4HI GCNGC 5 cut(s) 62, 86, 230, 351, 597
FokI GGATG 2 cut(s) 66, 650
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 5 cut(s) 62, 86, 230, 351, 597
FspAI RTGCGCAY 1 cut(s) 177
FspBI CTAG 1 cut(s) 708
FspI TGCGCA 2 cut(s) 177, 233
GlaI GCGC 4 cut(s) 177, 233, 286, 728
GluI GCNGC 5 cut(s) 62, 86, 230, 351, 597
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 2 cut(s) 162, 516
HaeIII GGCC 9 cut(s) 105, 166, 190, 260, 277, 313, 443, 496, 619
HapII CCGG 5 cut(s) 12, 123, 261, 278, 444
HhaI GCGC 4 cut(s) 178, 234, 287, 729
Hin1II CATG 5 cut(s) 137, 392, 431, 562, 727
Hin6I GCGC 4 cut(s) 176, 232, 285, 727
HinP1I GCGC 4 cut(s) 176, 232, 285, 727
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 5 cut(s) 15, 130, 217, 254, 646
HpaII CCGG 5 cut(s) 12, 123, 261, 278, 444
HphI GGTGA 2 cut(s) 68, 395
Hpy166II GTNNAC 2 cut(s) 336, 721
Hpy188I TCNGA 2 cut(s) 651, 690
Hpy188III TCNNGA 3 cut(s) 117, 267, 609
Hpy8I GTNNAC 2 cut(s) 336, 721
HpyAV CCTTC 5 cut(s) 75, 495, 594, 615, 628
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 5 cut(s) 359, 364, 427, 592, 739
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 182, 229, 238, 356
Hsp92II CATG 5 cut(s) 137, 392, 431, 562, 727
HspAI GCGC 4 cut(s) 176, 232, 285, 727
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Ksp22I TGATCA 2 cut(s) 385, 685
Kzo9I GATC 3 cut(s) 385, 611, 685
LmnI GCTCC 4 cut(s) 101, 392, 465, 535
Lsp1109I GCAGC 4 cut(s) 73, 216, 337, 583
MaeI CTAG 1 cut(s) 708
MalI GATC 3 cut(s) 387, 613, 687
MboI GATC 3 cut(s) 385, 611, 685
MfeI CAATTG 1 cut(s) 734
MhlI GDGCHC 2 cut(s) 243, 621
MluCI AATT 4 cut(s) 316, 408, 674, 734
MlyI GAGTC 2 cut(s) 24, 139
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 9 cut(s) 137, 156, 177, 235, 263, 303, 561, 568, 686
MroNI GCCGGC 1 cut(s) 277
MslI CAYNNNNRTG 1 cut(s) 432
MspI CCGG 5 cut(s) 12, 123, 261, 278, 444
MspR9I CCNGG 4 cut(s) 12, 93, 123, 498
MunI CAATTG 1 cut(s) 734
MvaI CCWGG 2 cut(s) 93, 498
MwoI GCNNNNNNNGC 5 cut(s) 102, 182, 229, 238, 356
NaeI GCCGGC 1 cut(s) 279
NciI CCSGG 2 cut(s) 12, 123
NdeI CATATG 1 cut(s) 55
NdeII GATC 3 cut(s) 385, 611, 685
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 5 cut(s) 137, 392, 431, 562, 727
NlaIV GGNNCC 5 cut(s) 97, 106, 442, 510, 619
NmeAIII GCCGAG 1 cut(s) 472
NsbI TGCGCA 2 cut(s) 177, 233
NspI RCATGY 1 cut(s) 727
PceI AGGCCT 2 cut(s) 166, 313
PdiI GCCGGC 1 cut(s) 279
PfeI GAWTC 3 cut(s) 217, 254, 646
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 5 cut(s) 63, 87, 231, 352, 598
PleI GAGTC 2 cut(s) 23, 138
PpsI GAGTC 2 cut(s) 23, 138
Psp6I CCWGG 2 cut(s) 91, 496
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 91, 496
PspN4I GGNNCC 5 cut(s) 97, 106, 442, 510, 619
PspOMI GGGCCC 1 cut(s) 617
PspPI GGNCC 9 cut(s) 104, 114, 154, 188, 275, 441, 509, 617, 618
RsaI GTAC 3 cut(s) 204, 700, 712
RsaNI GTAC 3 cut(s) 203, 699, 711
RseI CAYNNNNRTG 1 cut(s) 432
SatI GCNGC 5 cut(s) 62, 86, 230, 351, 597
Sau3AI GATC 3 cut(s) 385, 611, 685
Sau96I GGNCC 9 cut(s) 104, 114, 154, 188, 275, 441, 509, 617, 618
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 2 cut(s) 24, 139
ScrFI CCNGG 4 cut(s) 12, 93, 123, 498
SduI GDGCHC 2 cut(s) 243, 621
SetI ASST 7 cut(s) 198, 274, 397, 487, 493, 538, 598
SinI GGWCC 3 cut(s) 114, 154, 509
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 4 cut(s) 316, 408, 674, 734
SseBI AGGCCT 2 cut(s) 166, 313
SsiI CCGC 6 cut(s) 83, 86, 126, 323, 621, 731
SspMI CTAG 1 cut(s) 708
StuI AGGCCT 2 cut(s) 166, 313
StyD4I CCNGG 4 cut(s) 10, 91, 121, 496
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 2 cut(s) 161, 308
TaqII GACCGA 2 cut(s) 102, 526
TasI AATT 4 cut(s) 316, 408, 674, 734
TatI WGTACW 1 cut(s) 698
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 3 cut(s) 217, 254, 646
TscAI CASTG 6 cut(s) 145, 178, 352, 463, 475, 510
TseI GCWGC 4 cut(s) 61, 229, 350, 596
TspDTI ATGAA 1 cut(s) 687
TspRI CASTG 6 cut(s) 145, 178, 352, 463, 475, 510
VpaK11BI GGWCC 3 cut(s) 114, 154, 509
XceI RCATGY 1 cut(s) 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.