RchiOBHm_Chr2g0105511

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029787
Physical Location & Seq
Reverse (-)
16804319 .. 16807789
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47972

Sequence Viewer

Length: 477 bp
ATGGAAAACTTAAAAACTTTCTTCTTCACCGCCATTTCTCAAACTCCGGTAACCTGCAACACGACCTACGCCAATGAATCTAGGATGAGCCGATCTACAAAACCCATATGGCCATACGACGGGAAATTAGCTAACGCGGCATCACCAACGAACAGCTGCCGATCATGTCTACTTCCTCGGGTCCCCCATCTTCTGCAAAAGGAGATGGATTCGTTTCCGCTGCCAAGGAAGTTTCATTGCTTGATCAAGGAAGTCAGGGGAGGAGTTGTGTTCCCCAAACAGGTTCATTTTTTGTCAAGAAAGATGGTTTACTTGGCCTTGGTTTTGTTAAGATATCTTTCATTTAGCAAAGAGGATTCTTTGATGGATTTGCTTAGTAAGCTGGTTTATGGAGACCTGACCCAAGTACGGGATAGCCAGGCCAAAAGAGGGCCCTTTCTTTTTGAAGATCAAGTACGACAAGTATCCGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

158

Amino Acids

18.08

Weight (kDa)

9.62

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029787)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105511
rosa_samantha Rh2BG188600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 137
AciI CCGC 3 cut(s) 30, 137, 218
AcoI YGGCCR 1 cut(s) 110
AfaI GTAC 2 cut(s) 408, 456
AfiI CCNNNNNNNGG 5 cut(s) 119, 280, 408, 409, 429
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 3 cut(s) 131, 156, 382
AluI AGCT 3 cut(s) 131, 156, 382
Alw26I GTCTC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 4 cut(s) 110, 315, 420, 431
ApaI GGGCCC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 156, 220
AspS9I GGNCC 3 cut(s) 181, 431, 432
AsuHPI GGTGA 2 cut(s) 19, 135
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 435
BarI GAAGNNNNNNTAC 2 cut(s) 438, 470
BbvI GCAGC 2 cut(s) 143, 207
BccI CCATC 4 cut(s) 195, 199, 298, 358
BciT130I CCWGG 1 cut(s) 419
BciVI GTATCC 1 cut(s) 475
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 62
BfuI GTATCC 1 cut(s) 475
BisI GCNGC 3 cut(s) 138, 157, 221
BlsI GCNGC 3 cut(s) 139, 158, 222
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 181, 431, 432
BmiI GGNNCC 3 cut(s) 182, 183, 433
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 176, 224, 318
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 280, 408, 409, 429
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 176, 224, 318
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 5 cut(s) 119, 280, 408, 409, 429
BseMI GCAATG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 2 cut(s) 143, 207
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 4 cut(s) 112, 317, 422, 433
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 2 cut(s) 47, 468
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 5 cut(s) 119, 280, 408, 409, 429
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 4 cut(s) 112, 317, 422, 433
Bso31I GGTCTC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 177
Bsp120I GGGCCC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 4 cut(s) 92, 161, 243, 448
BspACI CCGC 3 cut(s) 30, 137, 218
BspANI GGCC 4 cut(s) 112, 317, 422, 433
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 3 cut(s) 182, 183, 433
BspMI ACCTGC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 176, 224, 318
BssMI GATC 4 cut(s) 92, 161, 243, 448
BssT1I CCWWGG 2 cut(s) 224, 318
Bst2UI CCWGG 1 cut(s) 419
BstDEI CTNAG 1 cut(s) 374
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 4 cut(s) 95, 164, 246, 451
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 4 cut(s) 92, 161, 243, 448
BstMWI GCNNNNNNNGC 2 cut(s) 137, 379
BstNI CCWGG 1 cut(s) 419
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 143, 207
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 4 cut(s) 112, 317, 422, 433
BtsCI GGATG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 181, 431, 432
Csp6I GTAC 2 cut(s) 407, 455
CviAII CATG 1 cut(s) 165
CviJI RGCY 9 cut(s) 90, 112, 131, 156, 317, 382, 417, 422, 433
CviKI_1 RGCY 9 cut(s) 90, 112, 131, 156, 317, 382, 417, 422, 433
CviQI GTAC 2 cut(s) 407, 455
DdeI CTNAG 1 cut(s) 374
DpnI GATC 4 cut(s) 94, 163, 245, 450
DpnII GATC 4 cut(s) 92, 161, 243, 448
EaeI YGGCCR 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 224, 318
Eco24I GRGCYC 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 49
EcoO109I RGGNCCY 3 cut(s) 181, 431, 432
EcoO65I GGTNACC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 224, 318
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 224, 318
FaeI CATG 1 cut(s) 168
FaiI YATR 5 cut(s) 107, 109, 115, 166, 390
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 164
FauNDI CATATG 1 cut(s) 107
FbaI TGATCA 1 cut(s) 243
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 138, 157, 221
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 3 cut(s) 138, 157, 221
FspBI CTAG 1 cut(s) 81
GluI GCNGC 3 cut(s) 138, 157, 221
HaeIII GGCC 4 cut(s) 112, 317, 422, 433
HapII CCGG 2 cut(s) 47, 468
Hin1II CATG 1 cut(s) 168
HinfI GANTC 3 cut(s) 77, 209, 356
HpaII CCGG 2 cut(s) 47, 468
HphI GGTGA 2 cut(s) 19, 135
Hpy166II GTNNAC 2 cut(s) 170, 310
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 2 cut(s) 170, 310
Hpy99I CGWCG 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 57, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 379
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 1 cut(s) 168
KflI GGGWCCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 4 cut(s) 92, 161, 243, 448
LpnPI CCDG 8 cut(s) 60, 67, 241, 266, 368, 404, 410, 431
Lsp1109I GCAGC 2 cut(s) 143, 207
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 94, 163, 245, 450
MboI GATC 4 cut(s) 92, 161, 243, 448
MboII GAAGA 4 cut(s) 13, 16, 182, 458
MfeI CAATTG 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 2 cut(s) 125, 472
MluNI TGGCCA 1 cut(s) 112
MnlI CCTC 4 cut(s) 186, 254, 346, 422
Mox20I TGGCCA 1 cut(s) 112
MscI TGGCCA 1 cut(s) 112
MseI TTAA 2 cut(s) 11, 329
Msp20I TGGCCA 1 cut(s) 112
MspA1I CMGCKG 2 cut(s) 156, 220
MspI CCGG 2 cut(s) 47, 468
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 137, 379
NdeI CATATG 1 cut(s) 107
NdeII GATC 4 cut(s) 92, 161, 243, 448
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 3 cut(s) 182, 183, 433
PfeI GAWTC 3 cut(s) 77, 209, 356
PkrI GCNGC 3 cut(s) 139, 158, 222
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 417
PspEI GGTNACC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 3 cut(s) 182, 183, 433
PspOMI GGGCCC 1 cut(s) 431
PspPI GGNCC 3 cut(s) 181, 431, 432
PspPPI RGGWCCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 2 cut(s) 408, 456
RsaNI GTAC 2 cut(s) 407, 455
SaqAI TTAA 2 cut(s) 11, 329
SatI GCNGC 3 cut(s) 138, 157, 221
Sau3AI GATC 4 cut(s) 92, 161, 243, 448
Sau96I GGNCC 3 cut(s) 181, 431, 432
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 435
SetI ASST 7 cut(s) 56, 68, 133, 158, 285, 384, 399
SfaNI GCATC 1 cut(s) 149
SinI GGWCC 1 cut(s) 181
Sse9I AATT 2 cut(s) 125, 472
SsiI CCGC 3 cut(s) 30, 137, 218
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 224, 318
TasI AATT 2 cut(s) 125, 472
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 3 cut(s) 77, 209, 356
Tru1I TTAA 2 cut(s) 11, 329
Tru9I TTAA 2 cut(s) 11, 329
TseI GCWGC 2 cut(s) 156, 220
TspDTI ATGAA 4 cut(s) 90, 224, 275, 330
VpaK11BI GGWCC 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 169
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.