Rh2BG188600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0029787
Physical Location & Seq
Reverse (-)
16940211 .. 16941216
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG188600.1

Sequence Viewer

Length: 285 bp
ATGGAAAACTTAAAAACTTTCTTCTTCACCGCCATTTCTCAAACTCCGGTAACCTGCAACACGACCTACGCCAAAGAATCTAGGATGAGCCGATCTACAAAACCCATATGGCCATACGACGGGAAGTTAGCTAACGCGGCATCACCAACGAACAGCTGCCGATCATGTCTACTTCCTCGGGGATGGATTCGTTTTCGCTGCCAAGGAAGTTTCATTGCTTTATCAAGGAAGTCAGGGGAGGAGTTGTGTTCCCCAAACAGGGGAAAAATTACATCTCCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.51

Weight (kDa)

9.72

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029787)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105511
rosa_samantha Rh2BG188600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 30, 137
AcoI YGGCCR 1 cut(s) 110
AfiI CCNNNNNNNGG 4 cut(s) 119, 258, 259, 260
AluBI AGCT 2 cut(s) 131, 156
AluI AGCT 2 cut(s) 131, 156
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 156, 198
AsuHPI GGTGA 2 cut(s) 19, 135
AvaI CYCGRG 1 cut(s) 177
BalI TGGCCA 1 cut(s) 112
BbvI GCAGC 2 cut(s) 143, 185
BccI CCATC 1 cut(s) 177
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 138, 157, 199
BlsI GCNGC 3 cut(s) 139, 158, 200
BmeT110I CYCGRG 1 cut(s) 177
BmsI GCATC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 176, 202
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 258, 259, 260
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 176, 202
BseGI GGATG 2 cut(s) 90, 188
BseLI CCNNNNNNNGG 4 cut(s) 119, 258, 259, 260
BseMI GCAATG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 143, 185
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 4 cut(s) 119, 258, 259, 260
BsnI GGCC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 177
Bsp143I GATC 2 cut(s) 92, 161
BspACI CCGC 2 cut(s) 30, 137
BspANI GGCC 1 cut(s) 112
BspFNI CGCG 1 cut(s) 137
BspMI ACCTGC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 176, 202
BssMI GATC 2 cut(s) 92, 161
BssT1I CCWWGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 2 cut(s) 90, 188
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 2 cut(s) 95, 164
BstMBI GATC 2 cut(s) 92, 161
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 49
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 143, 185
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 90, 188
BveI ACCTGC 1 cut(s) 62
CviAII CATG 1 cut(s) 165
CviJI RGCY 4 cut(s) 90, 112, 131, 156
CviKI_1 RGCY 4 cut(s) 90, 112, 131, 156
DpnI GATC 2 cut(s) 94, 163
DpnII GATC 2 cut(s) 92, 161
EaeI YGGCCR 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 168
FaiI YATR 4 cut(s) 107, 109, 115, 166
FatI CATG 1 cut(s) 164
FauNDI CATATG 1 cut(s) 107
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 138, 157, 199
FokI GGATG 2 cut(s) 97, 195
Fsp4HI GCNGC 3 cut(s) 138, 157, 199
FspBI CTAG 1 cut(s) 81
GluI GCNGC 3 cut(s) 138, 157, 199
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 47
Hin1II CATG 1 cut(s) 168
HinfI GANTC 2 cut(s) 77, 187
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 19, 135
Hpy166II GTNNAC 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 92, 161
LpnPI CCDG 4 cut(s) 60, 67, 219, 244
Lsp1109I GCAGC 2 cut(s) 143, 185
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 94, 163
MboI GATC 2 cut(s) 92, 161
MboII GAAGA 2 cut(s) 13, 16
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 112
MnlI CCTC 2 cut(s) 186, 232
Mox20I TGGCCA 1 cut(s) 112
MscI TGGCCA 1 cut(s) 112
MseI TTAA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeI CATATG 1 cut(s) 107
NdeII GATC 2 cut(s) 92, 161
NlaIII CATG 1 cut(s) 168
PfeI GAWTC 2 cut(s) 77, 187
PkrI GCNGC 3 cut(s) 139, 158, 200
PspEI GGTNACC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 138, 157, 199
Sau3AI GATC 2 cut(s) 92, 161
SetI ASST 4 cut(s) 56, 68, 133, 158
SfaNI GCATC 1 cut(s) 149
Sse9I AATT 1 cut(s) 267
SsiI CCGC 2 cut(s) 30, 137
SspMI CTAG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 202
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 77, 187
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 2 cut(s) 156, 198
TspDTI ATGAA 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 169
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.