RchiOBHm_Chr2g0110601

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029733
Physical Location & Seq
Forward (+)
22162164 .. 22163125
962 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48425

Sequence Viewer

Length: 450 bp
ATGTCTAAAGCACCAGCTCAAGAAGAAGCAGTGCATGCTTATGGATGGGCTGCTAGAGATTCCTCAGGAATTCTTTCCCCCTACCATTTCACTAGAAGGGCTAACGGGGATAATGATATCACCATCAAGATACAATATTGCGGAATTTGCCATGGAGACATTCACCTCGTAAAGAACAAAGTATGGTCGACCATTTATCCGACTGTGCCCGGTAAGATTTTGTATGATCTGAGATTTTGCTCAGGCGATGGCCTGTTTATGAGGCATCTTGCCTTCGTTTTTCAATTATGTTTCTTAATTTCGTGTTTCCCTTTCGCTTTGGTCCGTTCTCATCGACTCGGGTATTTCCCTTTCCCGATCAAAATTTCGATTAACTCACAGATCCAATTTCTTGTTTGGGTGTTGCTGTTTCCAGTGACTCTCCTCGGATTCCTTCAGTCGCCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

149

Amino Acids

16.97

Weight (kDa)

9.08

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029733)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110601 RchiOBHm_Chr6g0270291

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 3 cut(s) 69, 144, 363
AcuI CTGAAG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 3 cut(s) 69, 144, 363
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 112, 155
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 322
AxyI CCTNAGG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 37
BccI CCATC 3 cut(s) 39, 131, 242
BceAI ACGGC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 54, 93
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 151, 424
Bse1I ACTGG 1 cut(s) 413
Bse21I CCTNAGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 151, 424
BseGI GGATG 1 cut(s) 50
BseMII CTCAG 3 cut(s) 78, 221, 255
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 226, 357, 381
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 3 cut(s) 77, 222, 254
BspPI GGATC 1 cut(s) 376
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 151, 424
BssMI GATC 3 cut(s) 226, 357, 381
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 64, 230, 241
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 3 cut(s) 229, 360, 384
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 226, 357, 381
BstMWI GCNNNNNNNGC 2 cut(s) 35, 147
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 36, 420
Cac8I GCNNGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 322
CviAII CATG 2 cut(s) 35, 152
CviJI RGCY 4 cut(s) 17, 50, 101, 252
CviKI_1 RGCY 4 cut(s) 17, 50, 101, 252
DdeI CTNAG 3 cut(s) 64, 230, 241
DpnI GATC 3 cut(s) 228, 359, 383
DpnII GATC 3 cut(s) 226, 357, 381
Eco130I CCWWGG 1 cut(s) 151
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 419
Eco81I CCTNAGG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 69
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 38, 155
FaiI YATR 7 cut(s) 36, 42, 153, 184, 225, 260, 289
FatI CATG 2 cut(s) 34, 151
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 54, 93
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 38, 155
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 4 cut(s) 59, 336, 418, 429
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 112, 155
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 3 cut(s) 201, 231, 428
Hpy188III TCNNGA 4 cut(s) 20, 66, 127, 355
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 3 cut(s) 90, 283, 443
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 147
HpyF3I CTNAG 3 cut(s) 64, 230, 241
Hsp92II CATG 2 cut(s) 38, 155
Kzo9I GATC 3 cut(s) 226, 357, 381
LpnPI CCDG 6 cut(s) 27, 51, 223, 228, 266, 426
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 54, 93
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 228, 359, 383
MboI GATC 3 cut(s) 226, 357, 381
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 6 cut(s) 69, 144, 284, 297, 363, 386
MlyI GAGTC 2 cut(s) 330, 412
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 73, 176, 255, 434
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 3 cut(s) 296, 372, 448
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 35, 147
NciI CCSGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 151
NdeII GATC 3 cut(s) 226, 357, 381
NlaIII CATG 2 cut(s) 38, 155
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 59, 429
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 2 cut(s) 330, 412
PpsI GAGTC 2 cut(s) 330, 412
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 39
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 296, 372, 448
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 226, 357, 381
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 2 cut(s) 330, 412
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 210
SetI ASST 2 cut(s) 19, 168
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SphI GCATGC 1 cut(s) 38
Sse9I AATT 6 cut(s) 69, 144, 284, 297, 363, 386
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 137
SspMI CTAG 2 cut(s) 54, 93
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 3 cut(s) 188, 334, 368
TasI AATT 6 cut(s) 69, 144, 284, 297, 363, 386
TfiI GAWTC 2 cut(s) 59, 429
Tru1I TTAA 3 cut(s) 296, 372, 448
Tru9I TTAA 3 cut(s) 296, 372, 448
TscAI CASTG 2 cut(s) 36, 420
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 36, 420
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 3 cut(s) 69, 144, 363
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 2 cut(s) 54, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.